View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0409_low_5 (Length: 506)
Name: NF0409_low_5
Description: NF0409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0409_low_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 100 - 506
Target Start/End: Complemental strand, 45952601 - 45952185
Alignment:
| Q |
100 |
tcttgttagtgtgtgattattatcaattactcttctttcagtttttaccatttcacatagaatgaatgtttttgtctacaatttatcatgctggtggaat |
199 |
Q |
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| T |
45952601 |
tcttgttagtgtgtgattattatcaattaatcttctttcagtttttactatttcacatagaatgaatgtttttgtctacaatttatcatgctggtggaat |
45952502 |
T |
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| Q |
200 |
gttatcattggattgcggattcaaacttgaacaagaattatattttctttggaagagttgtatcccttaatattataaaagtattgtataatgtggatga |
299 |
Q |
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| T |
45952501 |
gttatcattggattgcggattcaaacttgtacaagaattatattttctttggaagagttgtatcccttaatattataaaagtattgtataatgtggatga |
45952402 |
T |
|
| Q |
300 |
tttaactcatacgggtggtgctagcttcagcaaaaagaagaataa-ttgtcttcaaacat---------aatgtgaggagtgagggccatttctacaaag |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
45952401 |
tttaactcatacgggtggtgctagcttcagcaaaaagaagaataatttgtcttcaaacataatgtgagaaatgtgaggagtgagggccatttctacaaag |
45952302 |
T |
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| Q |
390 |
cattggtttccaatcaccattattgactatacatcggttgtcatgtgtgaatgtttgtccatgcaaataacaaaaatgtagagagattgagggtctcctt |
489 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45952301 |
cattggtttccaatcaccgttattgactatacatcggttgtcatgtgtgaatgtttgtccatgcaaataacaaaaatgtagagagattgagggtctcctt |
45952202 |
T |
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| Q |
490 |
gtcctatatatacctct |
506 |
Q |
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| T |
45952201 |
gtcctatatatacctct |
45952185 |
T |
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