View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0409_low_6 (Length: 412)
Name: NF0409_low_6
Description: NF0409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0409_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 32546706 - 32547077
Alignment:
| Q |
30 |
aatataagagtatgatgtgtcgtgaaatcatcggacaaattttttgctatacgtagcatttgcttattctttattactcgtaaaaacgtttaaaaagttt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32546706 |
aatataagagtatgatgtgtcgtgaaatcatcggacaaatttttcgctatacgtagcatttgcttattctttattactcgtaaaaacatttaaaaagttt |
32546805 |
T |
|
| Q |
130 |
agtagtagagaaaataaagagaattccaacttgaatattggaccatctttgatcatcatgttaaattaaatgtacttgtcaaagaaagtagtatgttaaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32546806 |
agtagtagagaaaataaagagaattccaacttgaatattggaccatctttgatcatcatgttaaattaaatgtacttgtcaaagaaagtagtatgttaaa |
32546905 |
T |
|
| Q |
230 |
gcatgtgatgtcgtaaacgaaaattgacaggagacaaaaaagggttatagagaaatcagtcaatgagagattaggtagagaggctaaccaaacgacaaga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32546906 |
gcatgtgatgtcgtaaacgaaaattgacaggagacaaaaaagggttatagagaaatcagtcaatgagagattaggtagagaggctaaccaaatgacaaga |
32547005 |
T |
|
| Q |
330 |
gtctaagtcacaccttccactcctccctcgtaaatttctcctgtattttcgtctcactttcctctcattcat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
32547006 |
gtctaagtcacaccttccactcctccctcgtaaattcctcctgtattttcgtcccactttcctctcattcat |
32547077 |
T |
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