View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0410_high_1 (Length: 500)
Name: NF0410_high_1
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 254 - 472
Target Start/End: Complemental strand, 23505562 - 23505341
Alignment:
| Q |
254 |
agcaaacccctcaaatccctaagccttaaattcgaaaacccaattttagatcaacaaaatcataagaataacccaaattcgaaaacccattttcaatttg |
353 |
Q |
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| T |
23505562 |
agcaaacccctcaaatccctaagccttaaattcgaaaacccaattttagatcaacaaaatcataagaataacccaaattcgaaaacccatttccaatttg |
23505463 |
T |
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| Q |
354 |
caacc---cagaaattcatatgaagaagaacggatctagaatggaagaggaagattgaacagaaattcatccaaagaacaaggcttccaatttgcaaccc |
450 |
Q |
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| T |
23505462 |
caaccggccagaaattcatatgaagaagaacggatctagaatggaagaggaagattgaacagaaattcatccaaagaacaaggcttccaatttgcaaccc |
23505363 |
T |
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| Q |
451 |
aaaaattcatccaaacaaaggt |
472 |
Q |
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| T |
23505362 |
aaaaattcacccaaacaaaggt |
23505341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 23505815 - 23505722
Alignment:
| Q |
1 |
cttccccttcaattgaaacccatttatctttagattcttcatatagcaacaataacagccagcaccaacaacacttccagcactccacaaccaa |
94 |
Q |
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| T |
23505815 |
cttccccttcaattgaaacccatttatctttagattcttcatatttcaacaataacagccagcaccaacaacacttccagcactccacaaccaa |
23505722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52095111 - 52095170
Alignment:
| Q |
1 |
cttccccttcaattgaaacccatttatctttagattcttcatatagcaacaataacagcc |
60 |
Q |
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| T |
52095111 |
cttccccttcaattaaaacccatttatctttagattcttcatattccaacaataacagcc |
52095170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 405
Target Start/End: Original strand, 52095299 - 52095357
Alignment:
| Q |
347 |
caatttgcaacccagaaattcatatgaagaagaacggatctagaatggaagaggaagat |
405 |
Q |
| |
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||||||| |||||| |||||||| | ||||||||| |||||||||||||||||| |||| |
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| T |
52095299 |
caatttgaaacccataaattcatctaaagaagaacagatctagaatggaagagggagat |
52095357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Original strand, 52095186 - 52095243
Alignment:
| Q |
261 |
ccctcaaatccctaagccttaaattcgaaaacccaattttagatcaacaaaatcataa |
318 |
Q |
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| T |
52095186 |
ccctcaaatccccaagccccaaattcaaaaacccattttcagatcaacaaaaacataa |
52095243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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