View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0410_high_12 (Length: 285)
Name: NF0410_high_12
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 3615944 - 3616078
Alignment:
| Q |
101 |
ttcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacgatggattttaaacattatatgacccttgtaaattaaataaagga |
200 |
Q |
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| T |
3615944 |
ttcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaatggattttaaacattatatgacccttctaaattaaataaagga |
3616043 |
T |
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| Q |
201 |
cgatgaaagaggatgctattgatgattctctgctc |
235 |
Q |
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| T |
3616044 |
cgatgaaagaggatgctattgatgattctgtgctc |
3616078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 52077229 - 52077363
Alignment:
| Q |
101 |
ttcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacgatggattttaaacattatatgacccttgtaaattaaataaagga |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||| |
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| T |
52077229 |
ttcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaattgattttaattattatatgacccttgtaaattaaataaagga |
52077328 |
T |
|
| Q |
201 |
cgatgaaagaggatgctattgatgattctctgctc |
235 |
Q |
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||||||||||||| ||||||||||||||| ||||| |
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| T |
52077329 |
cgatgaaagaggacgctattgatgattctgtgctc |
52077363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 16756909 - 16756783
Alignment:
| Q |
101 |
ttcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacgatggattttaaacattatatgacccttgtaaattaaataaagga |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16756909 |
ttcttagaactccaacagggaaaaataaaggatgatgaaaatacatataagggacaatggattttaaacattatatgacccttgtaaattaaataaagga |
16756810 |
T |
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| Q |
201 |
cgatgaaagaggatgctattgatgatt |
227 |
Q |
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| T |
16756809 |
cgatgaaagaggatgttattgatgatt |
16756783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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