View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0410_high_20 (Length: 255)
Name: NF0410_high_20
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 11664464 - 11664239
Alignment:
| Q |
1 |
caatatttttgtttaatccattgttcccagtgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattat |
100 |
Q |
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| T |
11664464 |
caatatttttgtttaatccattgttcccaatgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattat |
11664365 |
T |
|
| Q |
101 |
tggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
11664364 |
tggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccatttacttcattgctcaaagacaagaatttgaac |
11664265 |
T |
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| Q |
201 |
cctaaatcaagatgagcaaaacaatc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
11664264 |
cctaaatcaagatgagcaaaacaatc |
11664239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 7344032 - 7344257
Alignment:
| Q |
1 |
caatatttttgtttaatccattgttcccagtgaaacgtgccacagaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattat |
100 |
Q |
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|||||| ||||||||||||| |||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
7344032 |
caatatctttgtttaatccagtgtttccaatgaaacgtgctacagaacaatctggagagaacaagcttgacgtttcatactcttttgcaccgcccattat |
7344131 |
T |
|
| Q |
101 |
tggcatttttgcaccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaac |
200 |
Q |
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| T |
7344132 |
tggcattcttgctccaatgttcacacgactcacatagttaggtttatatgtttggcccaacacgccactcacttcattgctcaaagacaagaatttgaag |
7344231 |
T |
|
| Q |
201 |
cctaaatcaagatgagcaaaacaatc |
226 |
Q |
| |
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||||||||||| |||||||||||||| |
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| T |
7344232 |
cctaaatcaaggtgagcaaaacaatc |
7344257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 11655963 - 11655782
Alignment:
| Q |
45 |
gaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtt |
144 |
Q |
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||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
11655963 |
gaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcatttttgctccaatgttcacacgactcacatagttaggtt |
11655864 |
T |
|
| Q |
145 |
tatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatc |
226 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11655863 |
tatatgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatc |
11655782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 11669731 - 11669550
Alignment:
| Q |
45 |
gaacaatctggagagaacaagcttgaggtttcatactcttttccacctcccattattggcatttttgcaccaatgttcacacgactcacatagttaggtt |
144 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| || |
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| T |
11669731 |
gaacaatctggggagaacaagcttgttgtttcatactcttttccacctcccattattggcattttcgctccaatgttcacacgactcacatagttagatt |
11669632 |
T |
|
| Q |
145 |
tatatgtttggcccaacacaccactcacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatc |
226 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11669631 |
tatatgtttggcccaacacaccacttacttcattgctcaaagacaagaatttgaaccctaaatcaagatgagcaaaacaatc |
11669550 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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