View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0410_high_4 (Length: 350)
Name: NF0410_high_4
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_high_4 |
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| [»] scaffold0477 (1 HSPs) |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 9729 - 10068
Alignment:
| Q |
1 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9729 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccct |
9828 |
T |
|
| Q |
101 |
tatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9829 |
tatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttct |
9928 |
T |
|
| Q |
201 |
gtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaaa |
300 |
Q |
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| T |
9929 |
gtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatcctcggatcaaaa |
10027 |
T |
|
| Q |
301 |
ttattcttattttaattaggtttaagtctgacgagaataat |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
10028 |
ttattcttattttaattaggtttaagtctgacgagaataat |
10068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 18180724 - 18181063
Alignment:
| Q |
1 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180724 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccct |
18180823 |
T |
|
| Q |
101 |
tatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18180824 |
tatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttct |
18180923 |
T |
|
| Q |
201 |
gtaatnnnnnnnntagtggaataaagtgggcaaggaataacaattttcctatacccacccacggtctatacatgaatggggggaaatcctcggatcaaaa |
300 |
Q |
| |
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||||| | |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
18180924 |
gtaataaaaaaaatcgtggaataaagtgggcaaggaataacaaatttcctatacccacccac-gtctatacatgaatggggggaaatcctcggatcaaaa |
18181022 |
T |
|
| Q |
301 |
ttattcttattttaattaggtttaagtctgacgagaataat |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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| T |
18181023 |
ttattcttattttaattaggtttaagtctgacgagaataat |
18181063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37189382 - 37189616
Alignment:
| Q |
1 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccgcaccct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37189382 |
tatgtaggagagatggccgagtggttgaaggtgcagtactggaactgctatgtaggctttttgtttaccgagggttcgaa---ctctctttccgcaccct |
37189478 |
T |
|
| Q |
101 |
tatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtggattctctattcctaatttatttctgttttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
37189479 |
tatcaagttcatcaatgttactgacctcaatgtttgcaaatagatatcattattccaactttgatgtgaattctctattcctaatttatttctgttttct |
37189578 |
T |
|
| Q |
201 |
gtaatnnnnnnnntagtggaataaagtgggcaaggaat |
238 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
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| T |
37189579 |
gtaataaaaaaaatagtggaataaagtgggcaaggaat |
37189616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 244819 - 244912
Alignment:
| Q |
1 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
94 |
Q |
| |
|
||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244819 |
tatgtaggaaagatggccgagcggttcaaggcgtagcattggaactgctatgtaggctttttgtttaccgagggttcgaatccctctctttccg |
244912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 66 - 101
Target Start/End: Complemental strand, 207817 - 207782
Alignment:
| Q |
66 |
taccgagggttcgaatccctctctttccgcaccctt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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| T |
207817 |
taccgagggttcgaatccctctctttccgctccctt |
207782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 27029868 - 27029783
Alignment:
| Q |
1 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaggc----tttttgtttaccgagggttcgaatc |
82 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
27029868 |
tatgtaggagagatggccgagtggttgaaggcgtagcactggaactgctatgtaagctttttttttttttaccgagggttcgaatc |
27029783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 42818 - 42790
Alignment:
| Q |
66 |
taccgagggttcgaatccctctctttccg |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
42818 |
taccgagggttcgaatccctctctttccg |
42790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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