View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0410_low_11 (Length: 336)

Name: NF0410_low_11
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0410_low_11
NF0410_low_11
[»] chr1 (4 HSPs)
chr1 (106-257)||(21155172-21155323)
chr1 (101-195)||(21160685-21160779)
chr1 (100-254)||(21078941-21079090)
chr1 (143-195)||(21074290-21074342)
[»] chr4 (3 HSPs)
chr4 (102-257)||(27731761-27731914)
chr4 (101-193)||(27738795-27738887)
chr4 (143-177)||(51220042-51220076)
[»] chr3 (1 HSPs)
chr3 (101-254)||(21249641-21249791)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 106 - 257
Target Start/End: Original strand, 21155172 - 21155323
Alignment:
Q  106 aagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaactat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21155172 aagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaactat 21155271  T
Q  206 gttccctccctgtttcacaccaccttcgttatttttcttcttttcttcacct 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21155272 gttccctccctgtttcacaccaccttcgttatttttcttcttttcttcacct 21155323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 101 - 195
Target Start/End: Original strand, 21160685 - 21160779
Alignment:
Q  101 aatgaaagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattca 195  Q
    |||||||||||||||||||| |||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21160685 aatgaaagaccaattggttttattcatctgaaacatcttctgttggaaactcattcaaatcaaaattcataacaactccttttggcttcaattca 21160779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 254
Target Start/End: Complemental strand, 21079090 - 21078941
Alignment:
Q  100 aaatgaaagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattag 199  Q
    ||||||||||||| |||    ||||||| ||||||| | |  ||||||||||| ||||||||||||||| ||||||||  || || |||||||||||||     
T  21079090 aaatgaaagaccagttgaacacattcatctgcaacaccatttgttggaagctcgttcaaatcaaaattcctaacaactttttctgacttcaattcattat 21078991  T
Q  200 aactatgttccctccctgtttcacaccaccttcgttatttttcttcttttcttca 254  Q
     ||| || || ||||||| ||     ||||||| |||||||||||| ||||||||    
T  21078990 gactctgctctctccctgatt-----caccttcattatttttcttcatttcttca 21078941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 21074342 - 21074290
Alignment:
Q  143 ttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattca 195  Q
    |||||| |||||||||||||||||||||||||||||  | || ||||||||||    
T  21074342 ttggaatctcattcaaatcaaaattcataacaactctatctgccttcaattca 21074290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 102 - 257
Target Start/End: Original strand, 27731761 - 27731914
Alignment:
Q  102 atgaaagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaa 201  Q
    ||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27731761 atgaaagactaattggtttcattcatgtgccacatcctctgttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattagaa 27731860  T
Q  202 ctatgttccctccctgtttcacaccaccttcgttatttttcttcttttcttcacct 257  Q
    || |||||| |||| |||   | || ||||| ||||||||||||||||||||||||    
T  27731861 ctctgttccatcccagtt--cctccgccttcattatttttcttcttttcttcacct 27731914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 101 - 193
Target Start/End: Original strand, 27738795 - 27738887
Alignment:
Q  101 aatgaaagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaatt 193  Q
    |||||||||||||||||||||||||||||| |||||||||  |||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  27738795 aatgaaagaccaattggtttcattcatgtgaaacatcttctattggaagcgcattcaaatcaaaattcataacaactcctttttgcttcaatt 27738887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 177
Target Start/End: Original strand, 51220042 - 51220076
Alignment:
Q  143 ttggaagctcattcaaatcaaaattcataacaact 177  Q
    |||||||||||||| ||||||||||||||||||||    
T  51220042 ttggaagctcattcgaatcaaaattcataacaact 51220076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 101 - 254
Target Start/End: Complemental strand, 21249791 - 21249641
Alignment:
Q  101 aatgaaagaccaattggtttcattcatgtgcaacatcttcagttggaagctcattcaaatcaaaattcataacaactccttttggcttcaattcattaga 200  Q
    ||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  21249791 aatgaaaaaccaattggtttcattcatgtgcaacatcttctgtttgaagctcattcaaatcaaaattcataacaactcctttt-gattcaattcattaaa 21249693  T
Q  201 actatgttccctccctgtttcacaccaccttcgttatttttcttcttttcttca 254  Q
    ||| |||||| ||||  |||  | |||||||| |||||||||||||||||||||    
T  21249692 actctgttccatcccatttt--cgccaccttcattatttttcttcttttcttca 21249641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 392 times since January 2019
Visitors: 3060