View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0410_low_27 (Length: 281)

Name: NF0410_low_27
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0410_low_27
NF0410_low_27
[»] chr4 (6 HSPs)
chr4 (21-263)||(18040125-18040367)
chr4 (21-260)||(22707818-22708057)
chr4 (30-233)||(26217146-26217349)
chr4 (30-119)||(20556923-20557012)
chr4 (30-108)||(8660499-8660577)
chr4 (63-119)||(12509613-12509669)
[»] chr7 (12 HSPs)
chr7 (21-260)||(23882964-23883203)
chr7 (33-233)||(5206143-5206343)
chr7 (33-233)||(27437397-27437597)
chr7 (23-233)||(27973228-27973438)
chr7 (30-233)||(566125-566328)
chr7 (21-145)||(3428063-3428187)
chr7 (33-233)||(29025590-29025790)
chr7 (27-151)||(8814208-8814332)
chr7 (27-151)||(42634647-42634771)
chr7 (78-119)||(38413157-38413198)
chr7 (88-119)||(4944910-4944941)
chr7 (52-117)||(1957797-1957862)
[»] chr6 (15 HSPs)
chr6 (20-263)||(27513811-27514054)
chr6 (21-260)||(16821178-16821417)
chr6 (30-233)||(16637593-16637796)
chr6 (33-233)||(335501-335701)
chr6 (33-233)||(27055320-27055520)
chr6 (27-151)||(619532-619656)
chr6 (27-151)||(24147075-24147199)
chr6 (27-151)||(20044261-20044384)
chr6 (63-238)||(25503088-25503263)
chr6 (21-109)||(20456406-20456494)
chr6 (63-178)||(5007596-5007711)
chr6 (30-119)||(18912118-18912207)
chr6 (78-178)||(5989891-5989991)
chr6 (88-119)||(28306866-28306897)
chr6 (88-119)||(28355672-28355703)
[»] chr3 (17 HSPs)
chr3 (21-260)||(8808184-8808423)
chr3 (21-260)||(21611614-21611853)
chr3 (33-233)||(10719252-10719452)
chr3 (30-233)||(15681605-15681808)
chr3 (23-233)||(25266909-25267119)
chr3 (21-145)||(3680272-3680396)
chr3 (21-145)||(30016842-30016966)
chr3 (33-258)||(3241947-3242171)
chr3 (27-151)||(6198171-6198295)
chr3 (27-151)||(8620212-8620336)
chr3 (27-151)||(15533501-15533625)
chr3 (27-151)||(46396875-46396999)
chr3 (30-119)||(12476520-12476609)
chr3 (78-238)||(9551821-9551981)
chr3 (63-178)||(41001765-41001880)
chr3 (63-178)||(41010547-41010662)
chr3 (63-115)||(27884087-27884139)
[»] chr5 (16 HSPs)
chr5 (21-260)||(12391602-12391841)
chr5 (33-233)||(23639529-23639729)
chr5 (33-233)||(23833158-23833358)
chr5 (30-233)||(21992795-21992998)
chr5 (21-145)||(37581400-37581524)
chr5 (30-193)||(27230585-27230748)
chr5 (30-233)||(12177532-12177735)
chr5 (30-233)||(26086301-26086504)
chr5 (30-233)||(33841877-33842080)
chr5 (30-226)||(11810378-11810574)
chr5 (27-151)||(1801890-1802014)
chr5 (27-151)||(7258323-7258447)
chr5 (27-151)||(7790586-7790710)
chr5 (64-233)||(21864429-21864598)
chr5 (63-178)||(24961778-24961893)
chr5 (69-118)||(20380525-20380574)
[»] chr1 (7 HSPs)
chr1 (20-262)||(6201138-6201380)
chr1 (30-233)||(31555482-31555685)
chr1 (63-178)||(31543425-31543540)
chr1 (21-109)||(19371816-19371904)
chr1 (78-119)||(13467253-13467294)
chr1 (78-119)||(13472247-13472288)
chr1 (21-66)||(22430557-22430602)
[»] scaffold0004 (1 HSPs)
scaffold0004 (21-259)||(191670-191908)
[»] scaffold0551 (1 HSPs)
scaffold0551 (39-263)||(9549-9773)
[»] chr2 (10 HSPs)
chr2 (33-233)||(16276885-16277085)
chr2 (33-233)||(21856543-21856743)
chr2 (23-233)||(3762980-3763190)
chr2 (78-226)||(21116447-21116596)
chr2 (63-178)||(35142089-35142204)
chr2 (78-178)||(24288600-24288700)
chr2 (63-178)||(15949630-15949745)
chr2 (88-178)||(20614202-20614292)
chr2 (69-118)||(30689904-30689953)
chr2 (30-73)||(24702014-24702057)
[»] scaffold0389 (2 HSPs)
scaffold0389 (33-233)||(3156-3356)
scaffold0389 (77-110)||(2799-2832)
[»] chr8 (5 HSPs)
chr8 (27-151)||(21479567-21479691)
chr8 (39-117)||(24706466-24706544)
chr8 (30-119)||(32002753-32002842)
chr8 (30-107)||(20736703-20736780)
chr8 (30-107)||(20745261-20745338)
[»] scaffold1197 (1 HSPs)
scaffold1197 (195-261)||(2392-2458)
[»] scaffold0202 (1 HSPs)
scaffold0202 (30-119)||(24761-24850)
[»] scaffold0357 (1 HSPs)
scaffold0357 (30-109)||(9342-9421)
[»] scaffold0132 (1 HSPs)
scaffold0132 (39-119)||(31876-31956)
[»] scaffold0016 (1 HSPs)
scaffold0016 (78-178)||(19124-19224)
[»] scaffold0044 (2 HSPs)
scaffold0044 (63-118)||(71083-71138)
scaffold0044 (64-110)||(71468-71514)
[»] scaffold0001 (1 HSPs)
scaffold0001 (30-119)||(99449-99538)
[»] scaffold0157 (1 HSPs)
scaffold0157 (63-119)||(10808-10864)
[»] scaffold0600 (1 HSPs)
scaffold0600 (40-107)||(8992-9059)
[»] scaffold0009 (1 HSPs)
scaffold0009 (64-119)||(152731-152786)
[»] scaffold0605 (1 HSPs)
scaffold0605 (81-119)||(5266-5304)
[»] scaffold0114 (1 HSPs)
scaffold0114 (30-100)||(31053-31123)
[»] scaffold0005 (1 HSPs)
scaffold0005 (64-109)||(301987-302032)
[»] scaffold0002 (1 HSPs)
scaffold0002 (78-178)||(125221-125321)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 21 - 263
Target Start/End: Complemental strand, 18040367 - 18040125
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18040367 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 18040268  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18040267 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcat 18040168  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatgatgt 263  Q
    ||||||| |||||||||||||||||||||||||||||||||||    
T  18040167 aggaatcagatcatactgcggtgttttctgagcctgatgatgt 18040125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 22708057 - 22707818
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22708057 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 22707958  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22707957 gtctccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcat 22707858  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatga 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  22707857 aggaatcggatcatactgcggtgttttctgagcctgatga 22707818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 26217146 - 26217349
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||| ||||||||||||||||||  |||||||||| ||| ||||||| |    
T  26217146 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgacattgtgccccttgatggaaaacacaaaagagatcaggtctccatc 26217245  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  26217246 gagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 26217345  T
Q  230 atca 233  Q
    ||||    
T  26217346 atca 26217349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 20557012 - 20556923
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| |||| ||| ||  | || |||||||||||||||||  ||||||||    
T  20557012 tcaatcaacttctggacttcaatcttcaaagagaaacagtgctcgacgtgatggccgggagctccttgatggaaggcacaggagaggtca 20556923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 8660577 - 8660499
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcac 108  Q
    |||||||| |||||||||||||||||||| |||||||| ||||| | |||||| |   | || ||||||||||||||||    
T  8660577 tcaatcagcttctggacttcaatcttcaaagagaaacagtgctcgatgtcatggctgggagctccttgatggaaggcac 8660499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 12509613 - 12509669
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||| ||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  12509613 aaacaatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtca 12509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 23882964 - 23883203
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23882964 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 23883063  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23883064 gtctccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcat 23883163  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatga 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23883164 aggaatcggatcatactgcggtgttttctgagcctgatga 23883203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 5206143 - 5206343
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  5206143 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 5206242  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  5206243 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 5206342  T
Q  233 a 233  Q
    |    
T  5206343 a 5206343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 27437597 - 27437397
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  27437597 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 27437498  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  27437497 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 27437398  T
Q  233 a 233  Q
    |    
T  27437397 a 27437397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 27973228 - 27973438
Alignment:
Q  23 atcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagt 122  Q
    |||||| |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||    
T  27973228 atcatcttcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggt 27973327  T
Q  123 ctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatag 222  Q
    ||||| | |||||||||| |||| |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |    
T  27973328 ctccatcgagccggcaatatcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattg 27973427  T
Q  223 gaatcggatca 233  Q
    |||| ||||||    
T  27973428 gaattggatca 27973438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 566125 - 566328
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  566125 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 566224  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     |||||||||| | || |||||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  566225 gagccggcaatattttcggtatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 566324  T
Q  230 atca 233  Q
    ||||    
T  566325 atca 566328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 3428063 - 3428187
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||| ||||||||     
T  3428063 acatcgtcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaatgtcatgactttgtgctccttgatggaaagcacaacagaggtcag 3428162  T
Q  121 gtctccacctagccggcaatttctt 145  Q
    |||||||   |||| ||||||||||    
T  3428163 gtctccattgagccagcaatttctt 3428187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 29025790 - 29025590
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||| ||||||||||||||||| || || |||||   |||||| ||||||||||||||||| ||||||||  |||||||||| ||| ||||||| | ||    
T  29025790 atcagcttctggacttcaatctttaaagaaaaacagcactcaacatcatgaccttgtgccccctgatggaaaacacaaaagagatcaggtctccatcgag 29025691  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||  ||  | |||| || |||| |||||||||| |||||||||||    
T  29025690 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaaataaatagggaaacaactccccatatttcattggaatcggatc 29025591  T
Q  233 a 233  Q
    |    
T  29025590 a 29025590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 8814332 - 8814208
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  8814332 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcttgtctcc 8814233  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  8814232 acctagtcggcaatttcttgggtat 8814208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 42634647 - 42634771
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  42634647 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 42634746  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  42634747 acctagtcggcaatttcttgggtat 42634771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 38413198 - 38413157
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  38413198 tcatgacctggtgccccttgatggaaggcacaagagaggtca 38413157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 119
Target Start/End: Original strand, 4944910 - 4944941
Alignment:
Q  88 gtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||||||||||||||||||||||||||    
T  4944910 gtgccccttgatggaaggcacaaaagaggtca 4944941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 117
Target Start/End: Complemental strand, 1957862 - 1957797
Alignment:
Q  52 tcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggt 117  Q
    ||||||| || ||||| |||||||  || |||| |  |||||||||||||||||||||||||||||    
T  1957862 tcttcaaagaaaaacagtgctcaatatcgtgacatgatgccccttgatggaaggcacaaaagaggt 1957797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 27514054 - 27513811
Alignment:
Q  20 tacatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514054 tacatcattgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 27513955  T
Q  120 agtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttca 219  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27513954 ggtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttca 27513855  T
Q  220 taggaatcggatcatactgcggtgttttctgagcctgatgatgt 263  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  27513854 taggaatcagatcatactgcggtgttttctgagcctgatgatgt 27513811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 16821178 - 16821417
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16821178 acatcatcgtcaatcagtttctggacctcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 16821277  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16821278 gtctccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttcat 16821377  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatga 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16821378 aggaatcggatcatactgcggtgttttctgagcctgatga 16821417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 16637796 - 16637593
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  16637796 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 16637697  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  16637696 gagccggcaatttcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 16637597  T
Q  230 atca 233  Q
    ||||    
T  16637596 atca 16637593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 335501 - 335701
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||| ||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  335501 atcagcttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 335600  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||| | || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  335601 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggatcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 335700  T
Q  233 a 233  Q
    |    
T  335701 a 335701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 27055320 - 27055520
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    |||||||||||||||| |||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  27055320 atcagtttctggacttaaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 27055419  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || ||| |||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  27055420 ccggcaatttcttcggtattggaggaggtggcctagtccggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 27055519  T
Q  233 a 233  Q
    |    
T  27055520 a 27055520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 619532 - 619656
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  619532 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcttgtctcc 619631  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  619632 acctagtcggcaatttcttgggtat 619656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 24147075 - 24147199
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  24147075 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 24147174  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  24147175 acctagtcggcaatttcttgggtat 24147199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 20044261 - 20044384
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  20044261 tcgtcgatcagcttctggacttcaatttcctaggagaaaca-tgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 20044359  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  20044360 acctagtcggcaatttcttgggtat 20044384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 238
Target Start/End: Original strand, 25503088 - 25503263
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  | | ||| |||||||||||||||||  | |||||||    
T  25503088 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatagccagctggcaatttcttaggtatacgaggaggtg 25503187  T
Q  163 gtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 238  Q
    |||||||||||||||| || ||   ||||||    |||| || | ||||||||||||| |||||||||||| ||||    
T  25503188 gtctggtctggacaagcttcctcctaagcaaatcgggaaacaacaccgcatatttcatgggaatcggatcaaactg 25503263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 109
Target Start/End: Original strand, 20456406 - 20456494
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 109  Q
    ||||| ||||| ||||| || ||||||||||||||||| |||||||| ||||| | |||||| ||  |||| |||||||||||||||||    
T  20456406 acatcgtcgtcgatcagcttttggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggtgctccttgatggaaggcaca 20456494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 5007711 - 5007596
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  5007711 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 5007612  T
Q  163 gtctggtctggacaag 178  Q
    ||||||||||||||||    
T  5007611 gtctggtctggacaag 5007596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 18912207 - 18912118
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||| |||||||||||| ||||||| |||||||  ||||| | |||||| ||| |||| ||||||||||||| |||  ||||||||    
T  18912207 tcaatcagcttctggacttcagtcttcaaagagaaacggtgctcgatgtcatggcctggtgctccttgatggaaggaacatgagaggtca 18912118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 5989991 - 5989891
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 177  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    ||||||||||||||||||||||    
T  5989991 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtggtctggtctggacaa 5989892  T
Q  178 g 178  Q
    |    
T  5989891 g 5989891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 28306897 - 28306866
Alignment:
Q  88 gtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||||||||||||||||||||||||||    
T  28306897 gtgccccttgatggaaggcacaaaagaggtca 28306866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 28355703 - 28355672
Alignment:
Q  88 gtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||||||||||||||||||||||||||    
T  28355703 gtgccccttgatggaaggcacaaaagaggtca 28355672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 8808423 - 8808184
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  8808423 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 8808324  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8808323 gtctccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcat 8808224  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatga 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8808223 aggaatcggatcatactgcggtgttttctgagcctgatga 8808184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 260
Target Start/End: Complemental strand, 21611853 - 21611614
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  21611853 acatcatcgtcaaccagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 21611754  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21611753 gtctccacctagccggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcat 21611654  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatga 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21611653 aggaatcggatcatactgcggtgttttctgagcctgatga 21611614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 10719252 - 10719452
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  10719252 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 10719351  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || || | |||||||||| |||||||||||    
T  10719352 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactacccatatttcattggaatcggatc 10719451  T
Q  233 a 233  Q
    |    
T  10719452 a 10719452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 15681605 - 15681808
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| |||||||||||||||||||||| |||  |||||||||| ||| ||||||| |    
T  15681605 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatagaaaacacaaaagagatcaggtctccatc 15681704  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||| ||| ||  |||||||| || ||||||||    
T  15681705 gagccggcaatttcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaggcaactttgcatatttaattggaatcgg 15681804  T
Q  230 atca 233  Q
    ||||    
T  15681805 atca 15681808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 23 - 233
Target Start/End: Complemental strand, 25267119 - 25266909
Alignment:
Q  23 atcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagt 122  Q
    |||||| |||||||||||||| ||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||    
T  25267119 atcatcttcaatcagtttctgaaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggt 25267020  T
Q  123 ctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatag 222  Q
    ||||| | |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |    
T  25267019 ctccatcgagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattg 25266920  T
Q  223 gaatcggatca 233  Q
    |||| ||||||    
T  25266919 gaattggatca 25266909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 3680396 - 3680272
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||     
T  3680396 acatcgtcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgactttgtgctccttgatggaaagcacaacagaggtcag 3680297  T
Q  121 gtctccacctagccggcaatttctt 145  Q
     ||||||   |||| ||||||||||    
T  3680296 ttctccattgagccagcaatttctt 3680272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 30016966 - 30016842
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||| ||||||||     
T  30016966 acatcgtcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaatgtcatgactttgtgctccttgatggaaagcacaacagaggtcag 30016867  T
Q  121 gtctccacctagccggcaatttctt 145  Q
    |||||||   |||| ||||||||||    
T  30016866 gtctccattgagccagcaatttctt 30016842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 33 - 258
Target Start/End: Original strand, 3241947 - 3242171
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||| ||||| ||||||||  | || || |||||||||| ||||||| ||||  |||||||||||||| || |||||||  ||||| ||| ||    
T  3241947 atcagtttctgaacttcgatcttcaaaaa-aagcagtgctcaacgtaatgacctggtgctgcttgatggaaggcataagagaggtcgggtctctaccgag 3242045  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    | | |||||| ||||| | ||| ||| || |||||||||||||||||||  | ||||||||  | ||||||| ||| ||||||||||||||||||  |||    
T  3242046 ctgacaattttttaggcaccggaggacgttgtctggtctggacaaggttcttctcaagcaaatagggaagcaactctgcatatttcataggaatcaaatc 3242145  T
Q  233 atactgcggtgttttctgagcctgat 258  Q
    |||||| | || ||||||||||||||    
T  3242146 atactgtgatgctttctgagcctgat 3242171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 6198295 - 6198171
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  6198295 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 6198196  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  6198195 acctagtcggcaatttcttgggtat 6198171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 8620336 - 8620212
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  8620336 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 8620237  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  8620236 acctagtcggcaatttcttgggtat 8620212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 15533501 - 15533625
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  15533501 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 15533600  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  15533601 acctagtcggcaatttcttgggtat 15533625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 46396875 - 46396999
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| ||||| |||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  46396875 tcgtcgatcagcttctgaacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 46396974  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  46396975 acctagtcggcaatttcttgggtat 46396999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 12476520 - 12476609
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||| |||||||||||| ||||||| |||||||||||||||| ||||||  |  |||| ||| |||||||||||||  ||||||||    
T  12476520 tcaatcagcttctggacttcagtcttcaaagagaaacaatgctcaatgtcatggtcgggtgctcctcgatggaaggcacaggagaggtca 12476609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 238
Target Start/End: Original strand, 9551821 - 9551981
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 177  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  | | ||| || ||||||||||||||  | ||||||||||||||||||||||    
T  9551821 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatagccagctggaaatttcttaggtatacgaggaggtggtctggtctggacaa 9551920  T
Q  178 ggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 238  Q
    | || ||   ||||||    |||| || | ||||||||||||| |||||||||||| ||||    
T  9551921 gcttcctcctaagcaaatcgggaaacaacaccgcatatttcatgggaatcggatcaaactg 9551981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 41001880 - 41001765
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  41001880 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 41001781  T
Q  163 gtctggtctggacaag 178  Q
    ||||||||||||||||    
T  41001780 gtctggtctggacaag 41001765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 41010662 - 41010547
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  41010662 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 41010563  T
Q  163 gtctggtctggacaag 178  Q
    ||||||||||||||||    
T  41010562 gtctggtctggacaag 41010547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 27884139 - 27884087
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagag 115  Q
    ||||| |||||||  ||||||||| ||| ||||||||||||||||||| ||||    
T  27884139 aaacagtgctcaatatcatgacctggtgtcccttgatggaaggcacaatagag 27884087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 21 - 260
Target Start/End: Original strand, 12391602 - 12391841
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  12391602 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcag 12391701  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  12391702 gtctccacctaggcggtaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaatgaaggaagcagctccgcatatttcat 12391801  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatga 260  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  12391802 aggaatcggatcatactgcggtgttttctgagcctgatga 12391841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 23639729 - 23639529
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  23639729 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 23639630  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  23639629 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 23639530  T
Q  233 a 233  Q
    |    
T  23639529 a 23639529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 23833158 - 23833358
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  23833158 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 23833257  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  23833258 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 23833357  T
Q  233 a 233  Q
    |    
T  23833358 a 23833358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 21992795 - 21992998
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  21992795 tcaatcagtttctggaccccaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 21992894  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     ||||||||||||||| |||||||| |||||||| || || ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||||||    
T  21992895 gagccggcaatttcttcggtatcggaggaggtggcctagtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaatcgg 21992994  T
Q  230 atca 233  Q
    ||||    
T  21992995 atca 21992998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 37581524 - 37581400
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||     
T  37581524 acatcgtcgtcaatcagcttctggacttcaatcttcaaggagaaacaatgctcaatgtcatgaccttgtgctccttgatggaaagcacaaaagaggtcag 37581425  T
Q  121 gtctccacctagccggcaatttctt 145  Q
    |||||||   |||||||||||||||    
T  37581424 gtctccattgagccggcaatttctt 37581400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 27230585 - 27230748
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  27230585 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 27230684  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaa 193  Q
     ||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||||||||    
T  27230685 gagccggcaatttcttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaa 27230748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 12177532 - 12177735
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  12177532 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 12177631  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     |||||||||| | || |||||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  12177632 gagccggcaatattttcggtatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 12177731  T
Q  230 atca 233  Q
    ||||    
T  12177732 atca 12177735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 26086301 - 26086504
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  26086301 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 26086400  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     |||||||||| | || |||||||| |||||||||||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  26086401 gagccggcaatattttcggtatcggaggaggtggtctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 26086500  T
Q  230 atca 233  Q
    ||||    
T  26086501 atca 26086504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 30 - 233
Target Start/End: Original strand, 33841877 - 33842080
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  33841877 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 33841976  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || ||||| ||    
T  33841977 gagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaattgg 33842076  T
Q  230 atca 233  Q
    ||||    
T  33842077 atca 33842080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 11810378 - 11810574
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  11810378 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 11810477  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 226  Q
     |||||||||| | || |||||||| |||||||| ||||| ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |||||    
T  11810478 gagccggcaatattttcggtatcggaggaggtggcctggtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaat 11810574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 1802014 - 1801890
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  1802014 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 1801915  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  1801914 acctagtcggcaatttcttgggtat 1801890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 7258323 - 7258447
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  7258323 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 7258422  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  7258423 acctagtcggcaatttcttgggtat 7258447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Complemental strand, 7790710 - 7790586
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  7790710 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 7790611  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  7790610 acctagtcggcaatttcttgggtat 7790586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 233
Target Start/End: Original strand, 21864429 - 21864598
Alignment:
Q  64 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtgg 163  Q
    ||||| |||||| |||||||||| ||||||||||||||||| ||||  |||| || | |||  |||  || |||||||||||||| || || ||||||||    
T  21864429 aacaacgctcaatgtcatgacctagtgccccttgatggaagacacatgagagatcgactctaaaccgtgcaggcaatttcttaggcattggaggaggtgg 21864528  T
Q  164 tctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatca 233  Q
    | | || ||||| ||||| || | ||||||   ||||| |||||||||||||||||| ||||| ||||||    
T  21864529 tttagtttggacgaggttcctcttaagcaaatcaggaaacagctccgcatatttcattggaattggatca 21864598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 24961778 - 24961893
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  24961778 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 24961877  T
Q  163 gtctggtctggacaag 178  Q
    ||||||||||||||||    
T  24961878 gtctggtctggacaag 24961893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 20380574 - 20380525
Alignment:
Q  69 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 118  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  20380574 tgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 20380525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 262
Target Start/End: Original strand, 6201138 - 6201380
Alignment:
Q  20 tacatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  6201138 tacatcatcgtcaatcaatttctggatttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgcgccccttgatggaagacacaaaagaggtca 6201237  T
Q  120 agtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttca 219  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6201238 ggtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaaagaaggaagcagctccgcatatttca 6201337  T
Q  220 taggaatcggatcatactgcggtgttttctgagcctgatgatg 262  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  6201338 taggaatcggatcatactgcggtgttttctgagcctgatgatg 6201380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 31555685 - 31555482
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacc 129  Q
    |||||||||||||||||  |||||||||| || |||||  |||| || ||||||||||||||||||||||||||  |||||||||| ||| ||||||| |    
T  31555685 tcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcgacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatc 31555586  T
Q  130 tagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcgg 229  Q
     ||||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| ||||||||    
T  31555585 gagccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcgg 31555486  T
Q  230 atca 233  Q
    ||||    
T  31555485 atca 31555482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 31543540 - 31543425
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  31543540 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 31543441  T
Q  163 gtctggtctggacaag 178  Q
    ||||||||||||||||    
T  31543440 gtctggtctggacaag 31543425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 19371904 - 19371816
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 109  Q
    ||||| ||||| ||||  || ||||||||||||||||| |||||||| ||||| | |||||| ||  |||| |||||||||||||||||    
T  19371904 acatcgtcgtcgatcaacttatggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggtgctccttgatggaaggcaca 19371816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 13467294 - 13467253
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  13467294 tcatgacctggtgccccttgatggaaggcacaagagaggtca 13467253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 13472288 - 13472247
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  13472288 tcatgacctggtgccccttgatggaaggcataagagaggtca 13472247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 22430602 - 22430557
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaac 66  Q
    |||||||| || ||||  ||||||||||||||||||||||||||||    
T  22430602 acatcatcctcgatcaacttctggacttcaatcttcaaggagaaac 22430557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 259
Target Start/End: Original strand, 191670 - 191908
Alignment:
Q  21 acatcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaa 120  Q
    ||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||     
T  191670 acatcgtcgtcgatcagcttctggacttcaatcttcaaggagaaacagtgctcaacgtcatgaccttgtgcccctcgatggaaggtacaaaagaggtcag 191769  T
Q  121 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||    
T  191770 gtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggttcctctcaagcaaagtaggaagcagctccgcatatttcat 191869  T
Q  221 aggaatcggatcatactgcggtgttttctgagcctgatg 259  Q
    |||||||||||||||||||||||||||||||||||||||    
T  191870 aggaatcggatcatactgcggtgttttctgagcctgatg 191908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0551 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0551
Description:

Target: scaffold0551; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 39 - 263
Target Start/End: Original strand, 9549 - 9773
Alignment:
Q  39 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggca 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||||||||||||||||||    
T  9549 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatgaaaggtacaatagaggtcaggtctccacctagccggca 9648  T
Q  139 atttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatcatactg 238  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||    
T  9649 atttcttaggtatcggcggaggtggtctggtctggacaaggttcctctcaagcaaagaaggaagcagctccgcatatttcataggaatcagatcatattg 9748  T
Q  239 cggtgttttctgagcctgatgatgt 263  Q
     ||||||||||||||||||||||||    
T  9749 tggtgttttctgagcctgatgatgt 9773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 16277085 - 16276885
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||||||||||| || || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  16277085 atcagtttctggacttcaatctttaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 16276986  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| || ||||||||  | |||| || |||| |||||||||| |||||||||||    
T  16276985 ccggcaatttcttcggtattggaggaggtggcctagtctggacaaggttcctctcaagcaaatagggaaacaactccccatatttcattggaatcggatc 16276886  T
Q  233 a 233  Q
    |    
T  16276885 a 16276885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 21856543 - 21856743
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  21856543 atcagtttctggaccccaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 21856642  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    ||||||||||||| |||||||| |||||||| || || ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |||||||||||    
T  21856643 ccggcaatttcttcggtatcggaggaggtggcctagtttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattggaatcggatc 21856742  T
Q  233 a 233  Q
    |    
T  21856743 a 21856743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 23 - 233
Target Start/End: Original strand, 3762980 - 3763190
Alignment:
Q  23 atcatcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagt 122  Q
    |||||| |||||||||||||||||  |||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||    
T  3762980 atcatcttcaatcagtttctggaccgcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggt 3763079  T
Q  123 ctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcatag 222  Q
    ||||| | |||||||||| |||| |||||||| |||||||| ||| | ||||||||||| || ||||||||  | ||||||| ||  |||||||| || |    
T  3763080 ctccatcgagccggcaatatcttcggtatcggaggaggtggcctgatttggacaaggttcctctcaagcaaatagggaagcaactttgcatatttaattg 3763179  T
Q  223 gaatcggatca 233  Q
    |||| ||||||    
T  3763180 gaattggatca 3763190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 78 - 226
Target Start/End: Complemental strand, 21116596 - 21116447
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggc-aatttcttaggtatcggcggaggtggtctggtctggaca 176  Q
    |||||| || |||||||||||||||||||||||||||||||  | ||  ||| ||| ||| ||||||||||||| | |   |||||||||||||||||||    
T  21116596 tcatgatctggtgccccttgatggaaggcacaaaagaggtcgggcctatacccagctggcaaatttcttaggtacccgataaggtggtctggtctggaca 21116497  T
Q  177 aggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaat 226  Q
    |||||  | | ||||||    ||||||||||| |||||||| || |||||    
T  21116496 aggttcttcttaagcaaaccgggaagcagctctgcatattttatgggaat 21116447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 178
Target Start/End: Complemental strand, 35142204 - 35142089
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  35142204 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 35142105  T
Q  163 gtctggtctggacaag 178  Q
    ||||||||||||||||    
T  35142104 gtctggtctggacaag 35142089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 24288700 - 24288600
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 177  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||  | ||| ||||||||||||||||||    
T  24288700 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacgaggaagtggtctggtctggacaa 24288601  T
Q  178 g 178  Q
    |    
T  24288600 g 24288600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 178
Target Start/End: Original strand, 15949630 - 15949745
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtg 162  Q
    |||||| ||||||  ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||    
T  15949630 aaacaacgctcaatatcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtg 15949729  T
Q  163 gtctggtctggacaag 178  Q
    |||| |||||||||||    
T  15949730 gtcttgtctggacaag 15949745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 178
Target Start/End: Complemental strand, 20614292 - 20614202
Alignment:
Q  88 gtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaag 178  Q
    ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||    |||||||||||||||||||||||    
T  20614292 gtgccccttgatggaagacacaatagaggtcgggcctatacccagctggcaatttcttaggcatacaaggaggtggtctggtctggacaag 20614202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 30689904 - 30689953
Alignment:
Q  69 tgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 118  Q
    |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  30689904 tgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 30689953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 73
Target Start/End: Complemental strand, 24702057 - 24702014
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctc 73  Q
    |||||||| |||||||||||||||||||| |||||||| |||||    
T  24702057 tcaatcagcttctggacttcaatcttcaaagagaaacagtgctc 24702014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0389
Description:

Target: scaffold0389; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 233
Target Start/End: Complemental strand, 3356 - 3156
Alignment:
Q  33 atcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctag 132  Q
    ||||| || ||||| ||||||||||| || |||||  ||||||| ||||||||||||||||||||||||||  |||||||||| ||| ||||||| | ||    
T  3356 atcagcttttggacctcaatcttcaaagaaaaacagcgctcaacatcatgaccttgtgccccttgatggaaaacacaaaagagatcaggtctccatcgag 3257  T
Q  133 ccggcaatttcttaggtatcggcggaggtggtctggtctggacaaggtttctttcaagcaacgaaggaagcagctccgcatatttcataggaatcggatc 232  Q
    |||||||||||||  ||||||| |||||||| || || ||||||||||| || ||||| ||  | ||||||||||  ||||||||||| ||||| |||||    
T  3256 ccggcaatttcttttgtatcggaggaggtggcctagtttggacaaggttcctctcaagaaaatagggaagcagctttgcatatttcattggaattggatc 3157  T
Q  233 a 233  Q
    |    
T  3156 a 3156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0389; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 110
Target Start/End: Complemental strand, 2832 - 2799
Alignment:
Q  77 gtcatgaccttgtgccccttgatggaaggcacaa 110  Q
    |||||||||| |||||||||||||||||||||||    
T  2832 gtcatgacctggtgccccttgatggaaggcacaa 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 21479567 - 21479691
Alignment:
Q  27 tcgtcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctcc 126  Q
    ||||| ||||| |||||||||||||| | | |||||||||| |||||||||||||||||||||||||||||||||||||  ||| |||| ||  ||||||    
T  21479567 tcgtcgatcagcttctggacttcaatttcctaggagaaacagtgctcaacgtcatgaccttgtgccccttgatggaaggtgcaagagagatcctgtctcc 21479666  T
Q  127 acctagccggcaatttcttaggtat 151  Q
    |||||| |||||||||||| |||||    
T  21479667 acctagtcggcaatttcttgggtat 21479691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 39 - 117
Target Start/End: Original strand, 24706466 - 24706544
Alignment:
Q  39 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggt 117  Q
    ||||||||||  |||||||| |||||||| |||||||||||||||  | ||||||||| ||||||||||||| ||||||    
T  24706466 ttctggactttgatcttcaaagagaaacagtgctcaacgtcatgagttggtgccccttcatggaaggcacaagagaggt 24706544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 32002842 - 32002753
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| ||||| || ||  | || |||||||||||||||||  ||||||||    
T  32002842 tcaatcaacttctggacttcaatcttcaaagagaaacagtgctcgacgtcgtggccgggagctccttgatggaaggcacaggagaggtca 32002753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 20736780 - 20736703
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggca 107  Q
    ||||| || |||||||||||| ||||||| |||||||| ||||  | |||||| ||  |||| |||||||||||||||    
T  20736780 tcaataagcttctggacttcagtcttcaaagagaaacagtgcttgatgtcatggcccggtgctccttgatggaaggca 20736703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 107
Target Start/End: Complemental strand, 20745338 - 20745261
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggca 107  Q
    ||||| || |||||||||||| ||||||| |||||||| ||||  | |||||| ||  |||| |||||||||||||||    
T  20745338 tcaataagcttctggacttcagtcttcaaagagaaacagtgcttgatgtcatggcccggtgctccttgatggaaggca 20745261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1197 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold1197
Description:

Target: scaffold1197; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 2458 - 2392
Alignment:
Q  195 gaaggaagcagctccgcatatttcataggaatcggatcatactgcggtgttttctgagcctgatgat 261  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  2458 gaaggaagcagctccgcatatttcataggaatcagatcatactgcggtgttttccgagcctgatgat 2392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 24761 - 24850
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||| |||||||||||||||||||| |||||||| || || | |||||| ||  |||| |||||||||||||||||  ||||||||    
T  24761 tcaatcagcttctggacttcaatcttcaaagagaaacagtgttcgatgtcatggccgggtgctccttgatggaaggcacatgagaggtca 24850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0357 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0357
Description:

Target: scaffold0357; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 9421 - 9342
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 109  Q
    |||||||| |||||||||||||| ||||| |||||||||||||| | |||||| ||  | || |||||||||||||||||    
T  9421 tcaatcagcttctggacttcaattttcaaagagaaacaatgctcgatgtcatggccgggagctccttgatggaaggcaca 9342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 31956 - 31876
Alignment:
Q  39 ttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||||||||||||||| |||||||| ||||| | |||||| ||  | || |||||||||||||||||  ||||||||    
T  31956 ttctggacttcaatcttcaaagagaaacagtgctcgatgtcatggccgggagctccttgatggaaggcacaggagaggtca 31876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 19224 - 19124
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 177  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| |||||||||||||| ||  | ||| ||||||||||||||||||    
T  19224 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctggcaatttcttaggcatacgaggatgtggtctggtctggacaa 19125  T
Q  178 g 178  Q
    |    
T  19124 g 19124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 71083 - 71138
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtc 118  Q
    ||||| |||||||  ||||||||| |||||||||||||||| ||||||||||||||    
T  71083 aaacagtgctcaatatcatgacctggtgccccttgatggaaagcacaaaagaggtc 71138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 71468 - 71514
Alignment:
Q  64 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaa 110  Q
    |||| ||||||  |||||||||| |||||||||||||||||||||||    
T  71468 aacactgctcagtgtcatgacctggtgccccttgatggaaggcacaa 71514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 99538 - 99449
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||  |||||||||||||||||||| |||||||| ||||| || || || ||  | || |||||||||||||||||  ||||||||    
T  99538 tcaatcaacttctggacttcaatcttcaatgagaaacagtgctcgacatcgtggccgggagctccttgatggaaggcacaggagaggtca 99449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 10864 - 10808
Alignment:
Q  63 aaacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||||| ||| | ||||||||| |||||||||||||||| |||||| ||||||||    
T  10864 aaacaatgttcagcatcatgacctggtgccccttgatggaaagcacaagagaggtca 10808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0600 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 107
Target Start/End: Complemental strand, 9059 - 8992
Alignment:
Q  40 tctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatggaaggca 107  Q
    ||||||||||||||||||| |||||| | ||||||||||||||  |  | || |||||||||||||||    
T  9059 tctggacttcaatcttcaaagagaaatagtgctcaacgtcatggtcgggagctccttgatggaaggca 8992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 152786 - 152731
Alignment:
Q  64 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||| ||||| | |||||| ||| |||||||||||||||||||||||||| |||||    
T  152786 aacagtgctcgatgtcatgtcctagtgccccttgatggaaggcacaaaagcggtca 152731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0605 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0605
Description:

Target: scaffold0605; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 5266 - 5304
Alignment:
Q  81 tgaccttgtgccccttgatggaaggcacaaaagaggtca 119  Q
    |||||| ||||||||||||||||||||||| ||||||||    
T  5266 tgacctggtgccccttgatggaaggcacaagagaggtca 5304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 31053 - 31123
Alignment:
Q  30 tcaatcagtttctggacttcaatcttcaaggagaaacaatgctcaacgtcatgaccttgtgccccttgatg 100  Q
    |||||||| || ||||||||||||||||| |||||||| ||||| | |||||| ||  |||| ||||||||    
T  31053 tcaatcagcttatggacttcaatcttcaaagagaaacattgctcgatgtcatggccaggtgctccttgatg 31123  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 109
Target Start/End: Complemental strand, 302032 - 301987
Alignment:
Q  64 aacaatgctcaacgtcatgaccttgtgccccttgatggaaggcaca 109  Q
    |||||||||||| |||||| ||  ||||||||||||||||||||||    
T  302032 aacaatgctcaatgtcatggccgggtgccccttgatggaaggcaca 301987  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 178
Target Start/End: Complemental strand, 125321 - 125221
Alignment:
Q  78 tcatgaccttgtgccccttgatggaaggcacaaaagaggtcaagtctccacctagccggcaatttcttaggtatcggcggaggtggtctggtctggacaa 177  Q
    ||||||||  ||||||||||||||||| ||||| |||||||  | ||  ||| ||| | |||||||||||| ||    ||| ||||||||||||||||||    
T  125321 tcatgaccaggtgccccttgatggaagacacaagagaggtcgggcctatacccagctgacaatttcttaggcatacaaggacgtggtctggtctggacaa 125222  T
Q  178 g 178  Q
    |    
T  125221 g 125221  T

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