View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0410_low_3 (Length: 383)

Name: NF0410_low_3
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0410_low_3
NF0410_low_3
[»] scaffold0177 (7 HSPs)
scaffold0177 (4-289)||(21767-22051)
scaffold0177 (1-242)||(21645-21885)
scaffold0177 (57-289)||(21935-22167)
scaffold0177 (1-157)||(22811-22966)
scaffold0177 (127-289)||(22848-23009)
scaffold0177 (148-258)||(21442-21552)
scaffold0177 (1-89)||(21442-21530)
[»] chr7 (9 HSPs)
chr7 (76-285)||(40589639-40589848)
chr7 (3-116)||(40589639-40589752)
chr7 (83-154)||(43181221-43181292)
chr7 (83-154)||(43181290-43181361)
chr7 (83-145)||(43181359-43181421)
chr7 (245-289)||(40589804-40589848)
chr7 (252-289)||(43181221-43181258)
chr7 (252-289)||(43181290-43181327)
chr7 (252-289)||(43181359-43181396)
[»] chr6 (5 HSPs)
chr6 (76-274)||(27901531-27901728)
chr6 (139-285)||(19284438-19284584)
chr6 (1-116)||(19284438-19284553)
chr6 (1-105)||(27901531-27901634)
chr6 (245-289)||(27901684-27901728)
[»] chr2 (4 HSPs)
chr2 (1-289)||(33866342-33866628)
chr2 (1-289)||(33866174-33866460)
chr2 (85-289)||(33866089-33866292)
chr2 (1-164)||(33866510-33866672)
[»] scaffold1425 (3 HSPs)
scaffold1425 (130-263)||(1-134)
scaffold1425 (85-197)||(1720-1832)
scaffold1425 (1-94)||(41-134)
[»] scaffold0320 (3 HSPs)
scaffold0320 (130-242)||(1-113)
scaffold0320 (1-146)||(41-199)
scaffold0320 (255-289)||(139-173)
[»] chr3 (2 HSPs)
chr3 (128-284)||(2941043-2941198)
chr3 (1-115)||(2941043-2941156)
[»] chr8 (3 HSPs)
chr8 (128-240)||(22651328-22651439)
chr8 (97-180)||(24632608-24632692)
chr8 (97-161)||(24632115-24632179)
[»] chr1 (2 HSPs)
chr1 (93-161)||(33036753-33036821)
chr1 (93-161)||(33036845-33036913)
[»] scaffold0585 (2 HSPs)
scaffold0585 (190-281)||(1590-1681)
scaffold0585 (21-112)||(1590-1681)
[»] chr4 (6 HSPs)
chr4 (85-124)||(15983848-15983887)
chr4 (85-124)||(15983915-15983954)
chr4 (85-124)||(15983982-15984021)
chr4 (254-294)||(15983848-15983888)
chr4 (254-294)||(15983915-15983955)
chr4 (254-294)||(15983982-15984022)
[»] scaffold0036 (6 HSPs)
scaffold0036 (23-73)||(93246-93296)
scaffold0036 (192-242)||(93246-93296)
scaffold0036 (23-73)||(93305-93355)
scaffold0036 (192-242)||(93305-93355)
scaffold0036 (23-67)||(93364-93408)
scaffold0036 (192-236)||(93364-93408)


Alignment Details
Target: scaffold0177 (Bit Score: 158; Significance: 6e-84; HSPs: 7)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 4 - 289
Target Start/End: Complemental strand, 22051 - 21767
Alignment:
Q  4 gtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaat 103  Q
    |||||| |||||||||||||||||||||||||||||||  || ||||| ||| ||| | |||||||||||  |||| ||||||||||||||| |||||||    
T  22051 gtctcccaaggaggaacctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattcattctagtaatgtaat 21952  T
Q  104 actatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaa 203  Q
    |||| ||||||||||||||||  || |||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||    
T  21951 actacttttatgatgattatggaccaaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcgaaaggaggaacctttggtgaccaaa 21852  T
Q  204 atttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatgatgat 289  Q
    |||| |||| | ||| ||||| ||||| |||||||||||  |||| ||| |||||||||||| |||||||||| ||||||||||||    
T  21851 attt-atcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgtaatactaattttatgatgat 21767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 21885 - 21645
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    |||||||| |||||||||||||||||||||||||||||| ||| | ||| ||||| ||||| |||||||||||  |||| ||| |||||||||||| |||    
T  21885 ttcgtctcgaaaggaggaacctttggtgaccaaaattta-tcctaccttctttggcttggattcttgccaaatgcctaatatagttcattctagttttgt 21787  T
Q  101 aatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgacc 200  Q
    ||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  21786 aatactaattttatgatgattatggacctaattaagaagttacttccctaaaataaagtttaaattaagttcgtctcccaaggaggaacctttggtgacc 21687  T
Q  201 aaaatttaatccgatcttttttgggttggaatcttgccaaat 242  Q
    |||||||||||||| ||| | ||| ||| | |||||||||||    
T  21686 aaaatttaatccgaacttgtatggcttgaattcttgccaaat 21645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 57 - 289
Target Start/End: Complemental strand, 22167 - 21935
Alignment:
Q  57 ttggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataa 156  Q
    ||||| |||||||||||  |||| ||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  22167 ttggattcttgccaaatgcctaatatagttcattctagttatgtaatactaattttatgatgattatgaacctaattaacaagttacttccttaaaataa 22068  T
Q  157 agtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattc 256  Q
    | |||||||||| || |||||| |||||||||||||||||||||||||||||||  || ||||| ||| ||| | |||||||||||  |||| |||||||    
T  22067 aatttaaattaagtttgtctcccaaggaggaacctttggtgaccaaaatttaatatgaacttttatggcttgaattcttgccaaatgcctaatataattc 21968  T
Q  257 attctagttatgtaatactatttttatgatgat 289  Q
    |||||||| ||||||||||| ||||||||||||    
T  21967 attctagtaatgtaatactacttttatgatgat 21935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 22966 - 22811
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    ||||||||| ||| ||||||||||||||||||||||||| ||| | ||||||||| ||||| ||||| |||||  |||| ||| ||||||||||||||||    
T  22966 ttcgtctcccaagaaggaacctttggtgaccaaaattta-tcctaccttttttggcttggattcttgtcaaatgcctaatatagttcattctagttatgt 22868  T
Q  101 aatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaa 157  Q
    ||||||| ||||||||||||||||  | |||||||||||||||||||||||||||||    
T  22867 aatactaattttatgatgattatggacataattaacaagttacttccctaaaataaa 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 127 - 289
Target Start/End: Complemental strand, 23009 - 22848
Alignment:
Q  127 cctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggt 226  Q
    |||||||||||| ||| || || ||||| ||||||||||||| ||||||||| ||| |||||||||||||||||||||||| |||| | ||||||||| |    
T  23009 cctaattaacaacttaatttccgaaaattaagtttaaattaagttcgtctcccaagaaggaacctttggtgaccaaaattt-atcctaccttttttggct 22911  T
Q  227 tggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatgatgat 289  Q
    |||| ||||| |||||  |||| ||| ||||||||||||||||||||||| ||||||||||||    
T  22910 tggattcttgtcaaatgcctaatatagttcattctagttatgtaatactaattttatgatgat 22848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 148 - 258
Target Start/End: Complemental strand, 21552 - 21442
Alignment:
Q  148 ctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagcta 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||| |||||||||||| |||    
T  21552 ctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaataccta 21453  T
Q  248 aaataattcat 258  Q
    | ||| |||||    
T  21452 atatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0177; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 21530 - 21442
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcat 89  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||| | ||||| |||||||||||| |||| ||| |||||    
T  21530 ttcgtctccaaaggaggaacctttggtgacaaaaatttaatccgaactttttttgcttggattcttgccaaatacctaatatagttcat 21442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 76 - 285
Target Start/End: Complemental strand, 40589848 - 40589639
Alignment:
Q  76 ctaaaataattcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtc 175  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||| | ||||    
T  40589848 ctaatatagttcattctagttatgtaatactaattttatgatgattatggacctaattaacaagttacttccctaatataaagtttaaattaagtacgtc 40589749  T
Q  176 tccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatact 275  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||  |||| ||| |||||| |||||||||||||||    
T  40589748 tccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaatact 40589649  T
Q  276 atttttatga 285  Q
    | ||||||||    
T  40589648 aattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 40589752 - 40589639
Alignment:
Q  3 cgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaa 102  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||  |||| ||| |||||| |||||||||||    
T  40589752 cgtctccaaatgaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatatagttcattttagttatgtaa 40589653  T
Q  103 tactatttttatga 116  Q
    ||||| ||||||||    
T  40589652 tactaattttatga 40589639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 43181221 - 43181292
Alignment:
Q  83 aattcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaat 154  Q
    |||||||||||||||| |||||||| |||||||||||||||   || |||||| ||||||||||||||||||    
T  43181221 aattcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 43181290 - 43181361
Alignment:
Q  83 aattcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaat 154  Q
    |||||||||||||||| |||||||| |||||||||||||||   || |||||| ||||||||||||||||||    
T  43181290 aattcattctagttatataatactaattttatgatgattatagaccaaattaataagttacttccctaaaat 43181361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 43181359 - 43181421
Alignment:
Q  83 aattcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttactt 145  Q
    |||||||||||||||| |||||||| |||||||||||||||   || |||||| |||||||||    
T  43181359 aattcattctagttatataatactaattttatgatgattatagaccaaattaataagttactt 43181421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 40589848 - 40589804
Alignment:
Q  245 ctaaaataattcattctagttatgtaatactatttttatgatgat 289  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||    
T  40589848 ctaatatagttcattctagttatgtaatactaattttatgatgat 40589804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 43181221 - 43181258
Alignment:
Q  252 aattcattctagttatgtaatactatttttatgatgat 289  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  43181221 aattcattctagttatataatactaattttatgatgat 43181258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 43181290 - 43181327
Alignment:
Q  252 aattcattctagttatgtaatactatttttatgatgat 289  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  43181290 aattcattctagttatataatactaattttatgatgat 43181327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 43181359 - 43181396
Alignment:
Q  252 aattcattctagttatgtaatactatttttatgatgat 289  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  43181359 aattcattctagttatataatactaattttatgatgat 43181396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 76 - 274
Target Start/End: Complemental strand, 27901728 - 27901531
Alignment:
Q  76 ctaaaataattcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtc 175  Q
    |||| ||| |||||||||||||| |||||||| ||||||||||||||||  ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  27901728 ctaatatagttcattctagttatttaatactaattttatgatgattatggacctaattaacaagttacatccctaaaataaagtttaaattaagttcgtc 27901629  T
Q  176 tccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatac 274  Q
    |||||||||||||||||| || |||||||||| |||| | ||||||||| ||||| |||||||||||  |||| ||| |||||||||||||||||||||    
T  27901628 tccaaaggaggaacctttcgtaaccaaaattt-atcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgtaatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 19284584 - 19284438
Alignment:
Q  139 gttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgcc 238  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||    
T  19284584 gttacttccctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgcc 19284485  T
Q  239 aaatagctaaaataattcattctagttatgtaatactatttttatga 285  Q
    ||||  | |  ||| ||||||||||||||||||||||||||||||||    
T  19284484 aaattccgattatagttcattctagttatgtaatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19284553 - 19284438
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| |||||||||||  | |  ||| ||||||||||||||||    
T  19284553 ttcgtctccaaaggaggaacctttggtgaccaacatttaatccgatattttttggtttggattcttgccaaattccgattatagttcattctagttatgt 19284454  T
Q  101 aatactatttttatga 116  Q
    ||||||||||||||||    
T  19284453 aatactatttttatga 19284438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 27901634 - 27901531
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    |||||||||||||||||||||||| || ||||||||||| ||| | ||||||||| ||||| |||||||||||  |||| ||| ||||||||||||||||    
T  27901634 ttcgtctccaaaggaggaacctttcgtaaccaaaattta-tcctaccttttttggcttggattcttgccaaattcctaatatagttcattctagttatgt 27901536  T
Q  101 aatac 105  Q
    |||||    
T  27901535 aatac 27901531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 27901728 - 27901684
Alignment:
Q  245 ctaaaataattcattctagttatgtaatactatttttatgatgat 289  Q
    |||| ||| |||||||||||||| |||||||| ||||||||||||    
T  27901728 ctaatatagttcattctagttatttaatactaattttatgatgat 27901684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 113; Significance: 4e-57; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 33866342 - 33866628
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    |||||||||||||||||||| | ||||||||||||||| |||| | |||||| || ||||| |||||| ||||  ||   ||| ||||||||| ||||||    
T  33866342 ttcgtctccaaaggaggaacttctggtgaccaaaattttatcctaccttttt-ggcttggattcttgctaaatgtctgctatagttcattctatttatgt 33866440  T
Q  101 aatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgacc 200  Q
    ||||||  || |||||||||||||  ||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33866441 aatactcattgtatgatgattatggacctaattaacaagtttctttcctaaaataaagtttaaattaagttcgtctccaaaggaggaacctttggtgacc 33866540  T
Q  201 aaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatgatgat 289  Q
    ||||||| |||| | |||||| || || || |||| ||||||  ||   ||| ||||||||| ||||||||||||  || |||||||||    
T  33866541 aaaattttatcctaccttttt-ggcttcgattctttccaaatgtctgctatagttcattctatttatgtaatactcattgtatgatgat 33866628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 33866174 - 33866460
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| | |||||| || || || |||||||||||   |   ||| ||||||||| ||||||    
T  33866174 ttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaacttttt-ggctttgattcttgccaaatgcttgctatagttcattctatttatgt 33866272  T
Q  101 aatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgacc 200  Q
    ||||||| || |||||||||||||  ||||| ||||||||| ||||||||||||||  |||||||||| |||||||||||||||||||| | ||||||||    
T  33866273 aatactaattctatgatgattatggacctaaataacaagtttcttccctaaaataatttttaaattaagttcgtctccaaaggaggaacttctggtgacc 33866372  T
Q  201 aaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatgatgat 289  Q
    ||||||| |||| | | ||||||| ||||| |||||| ||||  ||   ||| ||||||||| ||||||||||||  || |||||||||    
T  33866373 aaaattttatccta-cctttttggcttggattcttgctaaatgtctgctatagttcattctatttatgtaatactcattgtatgatgat 33866460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 289
Target Start/End: Original strand, 33866089 - 33866292
Alignment:
Q  85 ttcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaagga 184  Q
    ||||||||| ||||||||||||  || | |||||||||||  || ||||||||||||  ||| ||||||||||||  ||||||| |||||||||||||||    
T  33866089 ttcattctatttatgtaatactcattgtttgatgattatggacccaattaacaagttttttctctaaaataaagtacaaattaagttcgtctccaaagga 33866188  T
Q  185 ggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatg 284  Q
    ||||||||||||||||||||||| |||| | | ||||||| || || |||||||||||   |   ||| ||||||||| ||||||||||||| || ||||    
T  33866189 ggaacctttggtgaccaaaattttatcctaac-tttttggctttgattcttgccaaatgcttgctatagttcattctatttatgtaatactaattctatg 33866287  T
Q  285 atgat 289  Q
    |||||    
T  33866288 atgat 33866292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 33866510 - 33866672
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||| | |||||| || || || |||| ||||||  ||   ||| ||||||||| ||||||    
T  33866510 ttcgtctccaaaggaggaacctttggtgaccaaaattttatcctaccttttt-ggcttcgattctttccaaatgtctgctatagttcattctatttatgt 33866608  T
Q  101 aatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaa 164  Q
    ||||||  || |||||||||||||  ||||||||||||||| ||||||||||||||||||||||    
T  33866609 aatactcattgtatgatgattatggacctaattaacaagtttcttccctaaaataaagtttaaa 33866672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: scaffold1425
Description:

Target: scaffold1425; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 130 - 263
Target Start/End: Original strand, 1 - 134
Alignment:
Q  130 aattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttgg 229  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  1 aattaacaagttacttccctaaaataaagtttaaattgagttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  230 aatcttgccaaatagctaaaataattcattctag 263  Q
    | ||||||| |||  |||| ||| ||||||||||    
T  101 attcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 85 - 197
Target Start/End: Original strand, 1720 - 1832
Alignment:
Q  85 ttcattctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaagga 184  Q
    |||||||||||||| |||||||| | |||||||||||||   |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  1720 ttcattctagttatttaatactaatgttatgatgattatcgacctaattaaccagttacttccctaaaataaagtttaaattaagttcgtctccaaagga 1819  T
Q  185 ggaacctttggtg 197  Q
    |||||||||||||    
T  1820 ggaacctttggtg 1832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1425; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 41 - 134
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctag 94  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||| |||  |||| ||| ||||||||||    
T  41 ttcgtctccataggaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgcctaatgcctaatatagttcattctag 134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 89; Significance: 8e-43; HSPs: 3)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 1 - 113
Alignment:
Q  130 aattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttgg 229  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||    
T  1 aattaacaagttacttccctaaaataaggtttaaattaagttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttgg 100  T
Q  230 aatcttgccaaat 242  Q
    | |||||||||||    
T  101 attcttgccaaat 113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 41 - 199
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataa-------------ttc 87  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||  |||| ||||              ||    
T  41 ttcgtctccaaagaaggaacctttggtgaccaaaatttaatccgaacttttttggtttggattcttgccaaatgcctaatataaatgcctaatatagatc 140  T
Q  88 attctagttatgtaatactatttttatgatgattatgatcctaattaacaagttacttc 146  Q
    |||||||||||||||||||| ||||||||||||||||  |||| |||||||||||||||    
T  141 attctagttatgtaatactaattttatgatgattatggacctatttaacaagttacttc 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 139 - 173
Alignment:
Q  255 tcattctagttatgtaatactatttttatgatgat 289  Q
    |||||||||||||||||||||| ||||||||||||    
T  139 tcattctagttatgtaatactaattttatgatgat 173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 128 - 284
Target Start/End: Complemental strand, 2941198 - 2941043
Alignment:
Q  128 ctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggtt 227  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| |||| | ||||||||| ||    
T  2941198 ctaattaagaagttacttccctaaaataaagtttaaattaagttcgtttccaatggaggaacctttggtgaccaaaattt-atcctaccttttttggatt 2941100  T
Q  228 ggaatcttgccaaatagctaaaataattcattctagttatgtaatactatttttatg 284  Q
    ||| |||| ||||||  |||| ||| |||||||| |||||||||||||| |||||||    
T  2941099 ggattcttaccaaatgcctaatatagttcattctggttatgtaatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 2941156 - 2941043
Alignment:
Q  1 ttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgt 100  Q
    ||||| ||||| ||||||||||||||||||||||||||| ||| | ||||||||| ||||| |||| ||||||  |||| ||| |||||||| |||||||    
T  2941156 ttcgtttccaatggaggaacctttggtgaccaaaattta-tcctaccttttttggattggattcttaccaaatgcctaatatagttcattctggttatgt 2941058  T
Q  101 aatactatttttatg 115  Q
    ||||||| |||||||    
T  2941057 aatactaattttatg 2941043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 128 - 240
Target Start/End: Complemental strand, 22651439 - 22651328
Alignment:
Q  128 ctaattaacaagttacttccctaaaataaagtttaaattaacttcgtctccaaaggaggaacctttggtgaccaaaatttaatccgatcttttttgggtt 227  Q
    |||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||| ||||| || ||||| ||||| || | ||||||| | ||    
T  22651439 ctaattaacaagttactttcctaaaataaagtttaaactaagttcgtctgcaaaggaggaatctttgttgtccaaactttaa-ccaaccttttttagctt 22651341  T
Q  228 ggaatcttgccaa 240  Q
    ||| |||||||||    
T  22651340 ggattcttgccaa 22651328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 97 - 180
Target Start/End: Complemental strand, 24632692 - 24632608
Alignment:
Q  97 atgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaag-tttaaattaacttcgtctccaa 180  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  24632692 atgtaatactcattttatgatgattatggacctaattaacaagttacttccctaaaataaagttttaaattgagttcgtctccaa 24632608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 24632179 - 24632115
Alignment:
Q  97 atgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagttt 161  Q
    ||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  24632179 atgtaatacttattttatgatgattatggacctaattaacaagttacttccctaaaataaagttt 24632115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 33036753 - 33036821
Alignment:
Q  93 agttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagttt 161  Q
    ||||||||||||||  |||||||||||||||   || ||||||||||||||||||||||||||||||||    
T  33036753 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 33036845 - 33036913
Alignment:
Q  93 agttatgtaatactatttttatgatgattatgatcctaattaacaagttacttccctaaaataaagttt 161  Q
    ||||||||||||||  |||||||||||||||   || ||||||||||||||||||||||||||||||||    
T  33036845 agttatgtaatacttattttatgatgattatagaccaaattaacaagttacttccctaaaataaagttt 33036913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  190 ctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatactattttt 281  Q
    ||||||||||||||||||||||| | ||||||||| || || ||||||| |||  |||| ||| |||||||||||||| |||||||| ||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 1681 - 1590
Alignment:
Q  21 ctttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaatagctaaaataattcattctagttatgtaatactattttt 112  Q
    ||||||||||||||||||||||| | ||||||||| || || ||||||| |||  |||| ||| |||||||||||||| |||||||| ||||    
T  1681 ctttggtgaccaaaatttaatccaaacttttttggtttagattcttgcctaatgcctaatatagttcattctagttatttaatactaatttt 1590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15983848 - 15983887
Alignment:
Q  85 ttcattctagttatgtaatactatttttatgatgattatg 124  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15983848 ttcattctagttatgtaatactaattttatgatgattatg 15983887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15983915 - 15983954
Alignment:
Q  85 ttcattctagttatgtaatactatttttatgatgattatg 124  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15983915 ttcattctagttatgtaatactaattttatgatgattatg 15983954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 124
Target Start/End: Original strand, 15983982 - 15984021
Alignment:
Q  85 ttcattctagttatgtaatactatttttatgatgattatg 124  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15983982 ttcattctagttatgtaatactaattttatgatgattatg 15984021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 15983848 - 15983888
Alignment:
Q  254 ttcattctagttatgtaatactatttttatgatgatgatgt 294  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  15983848 ttcattctagttatgtaatactaattttatgatgattatgt 15983888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 15983915 - 15983955
Alignment:
Q  254 ttcattctagttatgtaatactatttttatgatgatgatgt 294  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  15983915 ttcattctagttatgtaatactaattttatgatgattatgt 15983955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 15983982 - 15984022
Alignment:
Q  254 ttcattctagttatgtaatactatttttatgatgatgatgt 294  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  15983982 ttcattctagttatgtaatactaattttatgatgattatgt 15984022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 93246 - 93296
Alignment:
Q  23 ttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaat 73  Q
    ||||||||||||||||||||| | ||||||||| ||||| ||||| |||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaat 93296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 93246 - 93296
Alignment:
Q  192 ttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaat 242  Q
    ||||||||||||||||||||| | ||||||||| ||||| ||||| |||||    
T  93246 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaat 93296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 73
Target Start/End: Original strand, 93305 - 93355
Alignment:
Q  23 ttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaat 73  Q
    ||||||||||||||||||||| | ||||||||| ||||| ||||| |||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaat 93355  T

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Target: scaffold0036; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 93305 - 93355
Alignment:
Q  192 ttggtgaccaaaatttaatccgatcttttttgggttggaatcttgccaaat 242  Q
    ||||||||||||||||||||| | ||||||||| ||||| ||||| |||||    
T  93305 ttggtgaccaaaatttaatccaaacttttttggtttggattcttgtcaaat 93355  T

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Target: scaffold0036; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 93364 - 93408
Alignment:
Q  23 ttggtgaccaaaatttaatccgatcttttttgggttggaatcttg 67  Q
    ||||||||||||||||||||| | ||||||||| ||||| |||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 93408  T

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Target: scaffold0036; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 93364 - 93408
Alignment:
Q  192 ttggtgaccaaaatttaatccgatcttttttgggttggaatcttg 236  Q
    ||||||||||||||||||||| | ||||||||| ||||| |||||    
T  93364 ttggtgaccaaaatttaatccaaacttttttggtttggattcttg 93408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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