View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0410_low_30 (Length: 276)

Name: NF0410_low_30
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0410_low_30
NF0410_low_30
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-184)||(18042-18225)
[»] chr3 (25 HSPs)
chr3 (4-185)||(24192828-24193009)
chr3 (2-183)||(9534203-9534382)
chr3 (1-183)||(23370505-23370686)
chr3 (2-178)||(14762758-14762933)
chr3 (4-178)||(20247791-20247964)
chr3 (4-178)||(38310802-38310975)
chr3 (1-86)||(24933828-24933910)
chr3 (1-85)||(41455097-41455178)
chr3 (1-112)||(16801467-16801576)
chr3 (2-63)||(18929239-18929300)
chr3 (2-66)||(17240513-17240577)
chr3 (4-183)||(55499104-55499283)
chr3 (1-56)||(13302240-13302295)
chr3 (1-56)||(13323787-13323842)
chr3 (1-56)||(12033444-12033499)
chr3 (1-56)||(13312896-13312951)
chr3 (1-56)||(17131732-17131787)
chr3 (1-56)||(51301589-51301644)
chr3 (1-56)||(14865846-14865901)
chr3 (1-36)||(23392819-23392854)
chr3 (4-58)||(16801027-16801081)
chr3 (1-54)||(10389443-10389496)
chr3 (1-54)||(10414532-10414585)
chr3 (1-54)||(10421202-10421255)
chr3 (1-37)||(2247649-2247685)
[»] scaffold0025 (1 HSPs)
scaffold0025 (4-185)||(14398-14579)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-183)||(111561-111741)
scaffold0026 (1-178)||(11850-12026)
[»] chr7 (27 HSPs)
chr7 (1-183)||(14422859-14423040)
chr7 (2-178)||(15168055-15168230)
chr7 (2-183)||(16009452-16009631)
chr7 (1-178)||(18873240-18873416)
chr7 (6-178)||(10895795-10895966)
chr7 (1-178)||(12709843-12710019)
chr7 (1-178)||(13122914-13123090)
chr7 (1-143)||(13743623-13743764)
chr7 (4-102)||(16677250-16677348)
chr7 (4-102)||(17651486-17651584)
chr7 (1-116)||(12590643-12590756)
chr7 (1-116)||(13007374-13007487)
chr7 (2-57)||(11382871-11382926)
chr7 (2-57)||(11389348-11389403)
chr7 (1-57)||(20311051-20311107)
chr7 (1-57)||(21230959-21231015)
chr7 (2-65)||(13679485-13679548)
chr7 (1-56)||(2971254-2971309)
chr7 (1-56)||(20906461-20906516)
chr7 (2-56)||(11311059-11311113)
chr7 (2-58)||(46625961-46626017)
chr7 (1-56)||(29181109-29181164)
chr7 (1-54)||(31155396-31155449)
chr7 (1-37)||(831633-831669)
chr7 (1-37)||(1196813-1196849)
chr7 (1-53)||(16091078-16091130)
chr7 (1-37)||(34958578-34958614)
[»] chr1 (16 HSPs)
chr1 (2-183)||(20437024-20437204)
chr1 (1-116)||(41111977-41112090)
chr1 (2-66)||(32651563-32651627)
chr1 (2-66)||(18712790-18712854)
chr1 (2-57)||(19663517-19663572)
chr1 (2-58)||(20805320-20805376)
chr1 (2-57)||(11158093-11158148)
chr1 (4-58)||(10811785-10811839)
chr1 (1-56)||(20851132-20851187)
chr1 (1-56)||(20857759-20857814)
chr1 (1-56)||(21706276-21706331)
chr1 (1-56)||(21710818-21710873)
chr1 (2-32)||(24476350-24476380)
chr1 (2-32)||(25091418-25091448)
chr1 (3-36)||(18271338-18271371)
chr1 (3-36)||(18275992-18276025)
[»] chr6 (30 HSPs)
chr6 (1-183)||(10986180-10986361)
chr6 (2-183)||(23839073-23839253)
chr6 (2-183)||(4477732-4477912)
chr6 (2-178)||(23057818-23057993)
chr6 (1-183)||(18800312-18800493)
chr6 (1-145)||(29614146-29614291)
chr6 (1-122)||(930095-930215)
chr6 (1-86)||(34639986-34640069)
chr6 (1-116)||(12168305-12168418)
chr6 (1-116)||(19287214-19287327)
chr6 (1-116)||(19785869-19785982)
chr6 (1-116)||(19878398-19878511)
chr6 (1-66)||(34646660-34646725)
chr6 (1-116)||(19884174-19884287)
chr6 (1-66)||(25469704-25469767)
chr6 (4-183)||(21565214-21565392)
chr6 (1-57)||(24512843-24512899)
chr6 (2-54)||(9187498-9187550)
chr6 (2-58)||(25348486-25348542)
chr6 (4-58)||(25598643-25598697)
chr6 (2-58)||(25397172-25397228)
chr6 (1-66)||(31252413-31252478)
chr6 (2-58)||(19471335-19471391)
chr6 (4-58)||(2286769-2286823)
chr6 (2-36)||(18659450-18659484)
chr6 (2-36)||(24441673-24441707)
chr6 (1-54)||(11288668-11288721)
chr6 (1-54)||(15458492-15458545)
chr6 (1-54)||(15465087-15465140)
chr6 (1-29)||(28288509-28288537)
[»] chr5 (13 HSPs)
chr5 (1-183)||(38144536-38144716)
chr5 (2-183)||(28370055-28370234)
chr5 (2-183)||(19512261-19512441)
chr5 (1-178)||(22751021-22751197)
chr5 (1-116)||(23528573-23528686)
chr5 (2-66)||(18407944-18408008)
chr5 (1-57)||(22438747-22438803)
chr5 (2-66)||(23111200-23111264)
chr5 (1-56)||(19236900-19236955)
chr5 (1-54)||(22461158-22461211)
chr5 (1-54)||(22467782-22467835)
chr5 (1-56)||(20781744-20781799)
chr5 (1-30)||(17021913-17021942)
[»] scaffold0553 (1 HSPs)
scaffold0553 (1-183)||(10195-10376)
[»] scaffold0544 (1 HSPs)
scaffold0544 (1-183)||(1525-1706)
[»] chr8 (14 HSPs)
chr8 (1-183)||(44477498-44477678)
chr8 (1-183)||(44492656-44492836)
chr8 (4-183)||(8727735-8727913)
chr8 (1-178)||(23866494-23866670)
chr8 (3-116)||(17054533-17054644)
chr8 (2-66)||(23482053-23482117)
chr8 (2-58)||(18614271-18614327)
chr8 (2-58)||(39364919-39364975)
chr8 (2-56)||(29643386-29643440)
chr8 (1-57)||(14056563-14056619)
chr8 (1-57)||(25111976-25112032)
chr8 (1-56)||(24320670-24320725)
chr8 (101-183)||(27940953-27941034)
chr8 (2-58)||(21931696-21931752)
[»] chr2 (17 HSPs)
chr2 (2-183)||(6483593-6483772)
chr2 (2-183)||(6487060-6487239)
chr2 (2-183)||(19661454-19661633)
chr2 (1-171)||(26583715-26583882)
chr2 (4-183)||(23878883-23879060)
chr2 (1-86)||(5706023-5706106)
chr2 (2-66)||(23265133-23265197)
chr2 (2-66)||(23280201-23280265)
chr2 (2-63)||(21908353-21908414)
chr2 (2-183)||(23101463-23101643)
chr2 (4-183)||(23089057-23089235)
chr2 (2-58)||(24661576-24661632)
chr2 (1-56)||(10577-10632)
chr2 (1-56)||(25180929-25180984)
chr2 (1-101)||(26885139-26885237)
chr2 (1-54)||(23168298-23168351)
chr2 (1-54)||(23579555-23579608)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-178)||(111761-111938)
[»] scaffold0924 (1 HSPs)
scaffold0924 (1-126)||(750-875)
[»] scaffold1773 (1 HSPs)
scaffold1773 (1-178)||(1058-1233)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-178)||(11221-11397)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-178)||(50059-50234)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-143)||(206-346)
[»] chr4 (16 HSPs)
chr4 (1-178)||(8045832-8046007)
chr4 (1-178)||(11847987-11848169)
chr4 (1-86)||(53483677-53483760)
chr4 (1-57)||(15408139-15408195)
chr4 (2-58)||(8834895-8834951)
chr4 (2-58)||(13888641-13888697)
chr4 (4-56)||(14486661-14486713)
chr4 (2-58)||(15245215-15245271)
chr4 (7-58)||(22724691-22724742)
chr4 (2-58)||(15308120-15308176)
chr4 (1-56)||(16146830-16146885)
chr4 (1-56)||(27906266-27906321)
chr4 (2-32)||(15069781-15069811)
chr4 (2-32)||(15076381-15076411)
chr4 (1-58)||(14912081-14912138)
chr4 (1-37)||(15747556-15747592)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-68)||(30846-30913)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-178)||(1897-2072)
scaffold0117 (1-178)||(8574-8749)
[»] scaffold0456 (2 HSPs)
scaffold0456 (1-68)||(920-987)
scaffold0456 (1-68)||(8065-8132)
[»] scaffold0796 (2 HSPs)
scaffold0796 (1-116)||(1732-1845)
scaffold0796 (1-116)||(5755-5868)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-86)||(45274-45357)
[»] scaffold0222 (1 HSPs)
scaffold0222 (2-66)||(16811-16875)
[»] scaffold0004 (2 HSPs)
scaffold0004 (2-66)||(116887-116951)
scaffold0004 (3-36)||(60441-60474)
[»] scaffold0476 (1 HSPs)
scaffold0476 (4-183)||(3295-3474)
[»] scaffold0077 (1 HSPs)
scaffold0077 (4-183)||(3624-3802)
[»] scaffold0461 (1 HSPs)
scaffold0461 (2-66)||(8-72)
[»] scaffold0310 (1 HSPs)
scaffold0310 (1-57)||(17643-17699)
[»] scaffold0146 (1 HSPs)
scaffold0146 (2-66)||(13623-13687)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-57)||(40531-40587)
[»] scaffold0020 (1 HSPs)
scaffold0020 (2-66)||(101928-101992)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-57)||(135473-135529)
[»] scaffold0235 (1 HSPs)
scaffold0235 (3-55)||(22594-22646)
[»] scaffold0124 (2 HSPs)
scaffold0124 (2-57)||(34276-34331)
scaffold0124 (1-58)||(35438-35495)
[»] scaffold0138 (1 HSPs)
scaffold0138 (2-58)||(12296-12352)
[»] scaffold0317 (1 HSPs)
scaffold0317 (2-65)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (2-57)||(14997-15052)
[»] scaffold0815 (1 HSPs)
scaffold0815 (2-53)||(1453-1504)
[»] scaffold0348 (1 HSPs)
scaffold0348 (1-56)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-56)||(10239-10294)
[»] scaffold0096 (1 HSPs)
scaffold0096 (3-58)||(39508-39563)
[»] scaffold0023 (1 HSPs)
scaffold0023 (1-56)||(135438-135493)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-56)||(493028-493082)
[»] scaffold1318 (1 HSPs)
scaffold1318 (2-56)||(1913-1967)
[»] scaffold0609 (1 HSPs)
scaffold0609 (1-66)||(5857-5922)
[»] scaffold0335 (1 HSPs)
scaffold0335 (2-58)||(2628-2684)
[»] scaffold0261 (1 HSPs)
scaffold0261 (1-56)||(23569-23624)
[»] scaffold0053 (1 HSPs)
scaffold0053 (1-56)||(79490-79545)
[»] scaffold2054 (1 HSPs)
scaffold2054 (1-54)||(717-770)
[»] scaffold0481 (1 HSPs)
scaffold0481 (3-48)||(676-721)
[»] scaffold0249 (1 HSPs)
scaffold0249 (1-54)||(13894-13947)
[»] scaffold0600 (1 HSPs)
scaffold0600 (2-58)||(732-788)
[»] scaffold0180 (1 HSPs)
scaffold0180 (2-51)||(11630-11681)
[»] scaffold0034 (1 HSPs)
scaffold0034 (4-56)||(73285-73337)
[»] scaffold0031 (2 HSPs)
scaffold0031 (2-58)||(121902-121958)
scaffold0031 (2-58)||(132778-132834)
[»] scaffold0028 (1 HSPs)
scaffold0028 (2-54)||(69749-69801)


Alignment Details
Target: scaffold0090 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 18225 - 18042
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |||||||||||||||||||| ||    
T  18225 ctaaggtaagggtgagactatctctcaataatcataatctataatttttgaaaattgacctaattgct-tagctttaggaaaataaattgagggttaagg 18127  T
Q  101 ttga-tgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatg 184  Q
    || | ||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18126 tttaatgatgattctaacgggaaatggtaatggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatg 18042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 4 - 185
Target Start/End: Complemental strand, 24193009 - 24192828
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  24193009 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggttt 24192911  T
Q  103 gatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgc 185  Q
    ||||| |||||||| ||||||| |||| || |||||||||||||| |||||||||||||| |||||||||||||||| ||||||    
T  24192910 gatgatgattctgaagggaaatgggtaatgatcatgttaattctg-ttgtaatgtgatgttcagaatgaaaacttaatctatgc 24192828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 9534382 - 9534203
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  9534382 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 9534285  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| ||||||||  ||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  9534284 ttgatgatgattctgagtggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 9534203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 23370505 - 23370686
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  23370505 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttaggg 23370603  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  23370604 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 23370686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 14762758 - 14762933
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  14762758 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 14762855  T
Q  101 ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  14762856 ttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 14762933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 20247791 - 20247964
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  20247791 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggttt 20247888  T
Q  103 gatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    ||||| |||||||| ||||||| |||| || ||||||||||| |  ||||||| | |||| ||||||||||||||||    
T  20247889 gatgatgattctgaagggaaatgggtaatgatcatgttaatt-ttcttgtaatataatgttcagaatgaaaacttaa 20247964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 4 - 178
Target Start/End: Original strand, 38310802 - 38310975
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 102  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  38310802 aggtaagggtgagactatctctcgataatcataatctataatttctgaatattgacctaattgc-atag-ttttggaagataaattgagggttagggttt 38310899  T
Q  103 gatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    ||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  38310900 gatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 38310975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 24933828 - 24933910
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||    
T  24933828 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataa 24933910  T

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Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 41455097 - 41455178
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaata 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||    
T  41455097 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaata 41455178  T

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Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 16801467 - 16801576
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||  ||||||||| | |  ||||||| ||||||||    
T  16801467 ctaaggtaagggtgagactatctctcaataatcat-atatataatttctgaaaattgacctgattgc-ttagcttttgaagataaaattgaaggttaggg 16801564  T
Q  101 ttgatgacgatt 112  Q
    ||||||| ||||    
T  16801565 ttgatgatgatt 16801576  T

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Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 18929300 - 18929239
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaa 63  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  18929300 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatctaa 18929239  T

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Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 17240513 - 17240577
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  17240513 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 17240577  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 55499104 - 55499283
Alignment:
Q  4 aggtaagggtgagactatctctcaataatc-ataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaattgagggttagggt 101  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| | ||||||||||||| |||   | |||  ||| ||  ||||||||||||||||    
T  55499104 aggtaagggtgagactatctctcattaatagataatatgtaatttcgggaaaattgacctaactgcttaaccttgaggataa--aattgagggttagggt 55499201  T
Q  102 t-gatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    | ||||| |||||||| |||||  |||| || ||||||||||| || |||||||||||||| | |||||||| ||||| ||||    
T  55499202 ttgatgatgattctgaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgatgttcggaatgaaatcttaatctat 55499283  T

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Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13302240 - 13302295
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  13302240 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 13302295  T

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Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13323787 - 13323842
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  13323787 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 13323842  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 12033444 - 12033499
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  12033444 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 12033499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 13312896 - 13312951
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||| ||||| |||||||||||||| | |||||| ||||||||    
T  13312896 ctaaggtaagggtgagattatctttcaataatcataatatgtaatttttgaaaatt 13312951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17131787 - 17131732
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  17131787 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 17131732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 51301644 - 51301589
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  51301644 ctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaatt 51301589  T

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Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 14865901 - 14865846
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  14865901 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 14865846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23392819 - 23392854
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcata 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  23392819 ctaaggtaagggtgagactaactctcaataatcata 23392854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 16801081 - 16801027
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||||| |||||||| ||  |||| ||||| |||||||||||||    
T  16801081 aggtaagggtgagactaactctcaatgattgtaatatataacttctgaaaattga 16801027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10389443 - 10389496
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  10389443 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaa 10389496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10414532 - 10414585
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  10414532 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaa 10414585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10421202 - 10421255
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  10421202 ctaaggtaagggtgggattatctttcaatgattataatgtataatttctgaaaa 10421255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2247649 - 2247685
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataa 37  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  2247649 ctaaggtaagggtgagactaactctcaataattataa 2247685  T

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Target: scaffold0025 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 4 - 185
Target Start/End: Original strand, 14398 - 14579
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  14398 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggttt 14496  T
Q  103 gatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctatgc 185  Q
    ||||| |||||||| ||||||| |||| || |||||||||||||| |||||||||||||| | |||||||||||||| ||||||    
T  14497 gatgatgattctgaagggaaatgggtaatgatcatgttaattctg-ttgtaatgtgatgttccgaatgaaaacttaatctatgc 14579  T

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Target: scaffold0026 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 111741 - 111561
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  111741 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 111644  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  111643 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 111561  T

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Target: scaffold0026; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11850 - 12026
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||    
T  11850 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagagttaggg 11947  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | || | ||||||||||||||||    
T  11948 tttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatcttcagaatgaaaacttaa 12026  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 14423040 - 14422859
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  14423040 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttaggg 14422942  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  14422941 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 14422859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 15168230 - 15168055
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  15168230 taaggtaagggtgagactatctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 15168133  T
Q  101 ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  15168132 ttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 15168055  T

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Target: chr7; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 16009631 - 16009452
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggtt-aggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||||| |||||||| ||||| |||     
T  16009631 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca--tggttttggaagataaattgtgggttaaggt 16009534  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  16009533 ttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 16009452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 18873416 - 18873240
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  18873416 ctaaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttaggg 18873319  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  18873318 tttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 18873240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 6 - 178
Target Start/End: Original strand, 10895795 - 10895966
Alignment:
Q  6 gtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-ttga 104  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| |||||||| ||||||||| ||||    
T  10895795 gtaagggtgagactatctctcaataatcataatctataatttttgaaaattgacctaattgc-atagtttttggaagataaattgtgggttagggtttga 10895893  T
Q  105 tgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    ||| |||||||| |||||  |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  10895894 tgatgattctgaggggaatgggtattgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 10895966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 12709843 - 12710019
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  12709843 ctaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 12709939  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||| ||| | ||||| |||| || ||||||||||||| |||||||| | |||| ||||||  ||||||||    
T  12709940 tttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaa 12710019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 13122914 - 13123090
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  13122914 ctaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 13123010  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||| ||| | ||||| |||| || ||||||||||||| |||||||| | |||| ||||||  ||||||||    
T  13123011 tttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaa 13123090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13743764 - 13743623
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  13743764 ctaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 13743668  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaatt 143  Q
     ||||||| |||| ||| | ||||| |||| || |||||||||||    
T  13743667 tttgatgatgattatgaagagaaatgggtaatgatcatgttaatt 13743623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 16677348 - 16677250
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaat-aaattgagggttagggtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| ||||||||||||    
T  16677348 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaattgacctaattgc-atagtttttggaagataaaattaagggttagggtt 16677250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 102
Target Start/End: Complemental strand, 17651584 - 17651486
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaat-aaattgagggttagggtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| || ||||| ||||||||||||    
T  17651584 aggtaagggtgagactatctctcaataatcataatctataatttctaaaaattgacctaattgc-atagtttttggaagataaaattaagggttagggtt 17651486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 12590643 - 12590756
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  12590643 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataatatgaaagttaggg 12590739  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  12590740 tttgatgatgattctga 12590756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 13007487 - 13007374
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  13007487 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttaggg 13007391  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  13007390 tttgatgatgattctga 13007374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 11382871 - 11382926
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11382871 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattg 11382926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 11389348 - 11389403
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11389348 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattg 11389403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 20311051 - 20311107
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  20311051 ctaaggtaagggtgagactatctctcaataatcataacgtataatttctgaaaattg 20311107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21230959 - 21231015
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  21230959 ctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 21231015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 13679548 - 13679485
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaatt 65  Q
    |||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||||    
T  13679548 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaatt 13679485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 2971309 - 2971254
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  2971309 ctaaggtaagggtgggattatctttcaatagtcataatttataatttctgaaaatt 2971254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20906461 - 20906516
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20906461 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20906516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 11311113 - 11311059
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||| ||||||    
T  11311113 taaggtaagggtgagactatctctcaataataatagtgtagaatttctaaaaatt 11311059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 46626017 - 46625961
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    |||| |||||||||||||| |||||||| || ||||| ||||||||| |||||||||    
T  46626017 taagataagggtgagactaactctcaatgattataatatataatttcggaaaattga 46625961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 29181109 - 29181164
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  29181109 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 29181164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31155449 - 31155396
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  31155449 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 31155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 831633 - 831669
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataa 37  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  831633 ctaaggtaagggtgagactaactctcaataattataa 831669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1196813 - 1196849
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataa 37  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  1196813 ctaaggtaagggtgagactaactctcaataattataa 1196849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16091130 - 16091078
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 53  Q
    |||||||||||||| || ||||| |||||| ||||||| | ||||||||||||    
T  16091130 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaa 16091078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34958614 - 34958578
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataa 37  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  34958614 ctaaggtaagggtgagactaactctcaataattataa 34958578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 20437024 - 20437204
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  20437024 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggt 20437122  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||||||| |||||  |||| || ||||||||||| || ||||||||| |||| |||||||||||||||| ||||    
T  20437123 ttgatgatgattctgaggggaatgggtattgatcatgttaattatg-ttgtaatgtaatgttcagaatgaaaacttaatctat 20437204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 41112090 - 41111977
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |||||||  |||  |||||||    
T  41112090 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttgaaaaataagatgaaagttaggg 41111994  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  41111993 tttgatgatgattctga 41111977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 32651627 - 32651563
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  32651627 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 32651563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 18712854 - 18712790
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  18712854 taaggtatgggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 18712790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 19663517 - 19663572
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  19663517 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattg 19663572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 20805376 - 20805320
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  20805376 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 20805320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 11158148 - 11158093
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  11158148 taaggtaagggtgagactaactctcaatgatcttaatatataatttctgaaaattg 11158093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 10811785 - 10811839
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  10811785 aggtaagggtgagactatctctcaataataatagtgtagaatttctgaaaattga 10811839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20851132 - 20851187
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20851132 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20851187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 20857759 - 20857814
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  20857759 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 20857814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21706331 - 21706276
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  21706331 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 21706276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 21710873 - 21710818
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  21710873 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 21710818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 24476380 - 24476350
Alignment:
Q  2 taaggtaagggtgagactatctctcaataat 32  Q
    |||||||||||||||||||||||||||||||    
T  24476380 taaggtaagggtgagactatctctcaataat 24476350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Original strand, 25091418 - 25091448
Alignment:
Q  2 taaggtaagggtgagactatctctcaataat 32  Q
    |||||||||||||||||||||||||||||||    
T  25091418 taaggtaagggtgagactatctctcaataat 25091448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 18271371 - 18271338
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcata 36  Q
    |||||||||||||||||| |||||||||||||||    
T  18271371 aaggtaagggtgagactaactctcaataatcata 18271338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 18276025 - 18275992
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcata 36  Q
    |||||||||||||||||| |||||||||||||||    
T  18276025 aaggtaagggtgagactaactctcaataatcata 18275992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10986180 - 10986361
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  10986180 ctaaggtaagggtgagactatctttcaataatcataatctataatttctaaaaattgacctaattgc-atagtttttggaagataaattgagggttaggg 10986278  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| |||| |||||||||||||||| ||||    
T  10986279 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaacttaatctat 10986361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 23839253 - 23839073
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||| ||||||||||||||||||     
T  23839253 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtgtttggaagataaattgagggttagggt 23839155  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||||| | |||||  |||| || |||||||||||||| ||||||||| |||| |||||||||||||||| ||||    
T  23839154 ttgatgatgattctaaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaacttaatctat 23839073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 4477912 - 4477732
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||     
T  4477912 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttagggt 4477814  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||||||| |||||  |||| || ||||| |||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  4477813 ttgatgatgattctgaggggaatgggtattgatcatgctaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 4477732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 178
Target Start/End: Complemental strand, 23057993 - 23057818
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  23057993 taaggtaagggtgagactatctctcgataatcataatctataattcctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 23057896  T
Q  101 ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  23057895 ttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 23057818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 18800493 - 18800312
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaata-aattgagggttagg 99  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||    
T  18800493 ctaatgtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-ttag-ttttggaaaatagaattgagggttagg 18800396  T
Q  100 g-ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    | ||||||| |||||||  |||||   ||| || |||||||||||||| |||||||||||||| || ||||||| ||||| ||||    
T  18800395 gtttgatgatgattctggagggaatgagtaatgatcatgttaattctg-ttgtaatgtgatgttcaaaatgaaatcttaatctat 18800312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 29614146 - 29614291
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||  ||| | |||||||||||||||||||||    
T  29614146 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctagttgc-ataattttggaaaaataaattgagggttaggg 29614244  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattct 145  Q
     ||||||| |||| ||| ||||||| |||| || |||||||||||||    
T  29614245 tttgatgatgattatgaagggaaatgggtaatgatcatgttaattct 29614291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 930095 - 930215
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  |||| ||||| |||||||||||||||||||||    
T  930095 ctaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattg-tatag-ttttgaaaaataaattgagggttaggg 930192  T
Q  101 -ttgatgacgattctgacgggaa 122  Q
     ||||||| | |||||| |||||    
T  930193 tttgatgatgtttctgaagggaa 930215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 34639986 - 34640069
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa 86  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  34639986 ctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaattgacctaattg-aatag-ttttggaaaataa 34640069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12168418 - 12168305
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  12168418 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttaggg 12168322  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  12168321 tttgatgatgattctga 12168305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19287327 - 19287214
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  19287327 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttaggg 19287231  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  19287230 tttgatgatgattctga 19287214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 19785869 - 19785982
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||| |||  |||||||    
T  19785869 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctagttg-aatag-ttttggaaaataaaatgaaagttaggg 19785965  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  19785966 tttgatgatgattctga 19785982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19878511 - 19878398
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  19878511 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttaggg 19878415  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  19878414 tttgatgatgattctga 19878398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 34646660 - 34646725
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  34646660 ctaaggtaagggtgagactatctctcaataatcttaatctataatttctgaaaattgacctaattg 34646725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 19884287 - 19884174
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  19884287 ctaaggttagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttaggg 19884191  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  19884190 tttgatgatgattctga 19884174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25469704 - 25469767
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  25469704 ctaaggtaagggtgagactatctctcaataatcataatctataa-ttctg-aaattgacctaattg 25469767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 21565214 - 21565392
Alignment:
Q  4 aggtaagggtgagactatctctcaataat-cataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-t 101  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| |  |||||||||||||||| |    
T  21565214 aggtaagggtgagactatctctcattaatagataatatttaatttcggaaaattgacctaattgcttaaccttgaggata--aaattgagggttagggtt 21565311  T
Q  102 tgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    |||||| |||||| | |||||  |||| || ||||||||||| || ||||||||||| || | |||||||| ||||| ||||    
T  21565312 tgatgatgattctaaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgacgttcggaatgaaatcttaatctat 21565392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 24512843 - 24512899
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  24512843 ctaaggtgagggtgagactatctctcaataatcatagtatataatttctgaaaattg 24512899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 9187550 - 9187498
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||||||||||||||||||||| ||||  ||||||||||||||    
T  9187550 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaa 9187498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 25348542 - 25348486
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  25348542 taaggtaagggtgagactatctctcaataataatagtatagaatttctgaaaattga 25348486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 25598697 - 25598643
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||||    
T  25598697 aggtaagggtgagactaactctcaatgatcataatatatattttctgaaaattga 25598643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 25397228 - 25397172
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  25397228 taaggtaagggtgaggctaactctcgatgatcataatatataatttctgaaaattga 25397172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31252478 - 31252413
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||| ||||| | ||| || ||||| ||||||||||||||||| | |||||||    
T  31252478 ctaaggtaagggtgagattatcttttaatgattataatatataatttctgaaaattaatctaattg 31252413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 19471335 - 19471391
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| ||||| || |||||||| ||||||||||| |||||||    
T  19471335 taaggtaagggtgaggctacctctcgatgatcataatatataatttctggaaattga 19471391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 2286769 - 2286823
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||||| |||||||| ||  |||| ||||| |||||||||||||    
T  2286769 aggtaagggtgagactaactctcaatgattgtaatatataacttctgaaaattga 2286823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 18659484 - 18659450
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcata 36  Q
    ||||||||||||||||||| |||||||||||||||    
T  18659484 taaggtaagggtgagactaactctcaataatcata 18659450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 24441707 - 24441673
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcata 36  Q
    ||||||||||||||||||| |||||||||||||||    
T  24441707 taaggtaagggtgagactaactctcaataatcata 24441673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11288668 - 11288721
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| ||| |||| |||||||||||||||    
T  11288668 ctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 11288721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15458545 - 15458492
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  15458545 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15458492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15465140 - 15465087
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  15465140 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 15465087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 28288509 - 28288537
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaat 29  Q
    |||||||||||||||||||||||||||||    
T  28288509 ctaaggtaagggtgagactatctctcaat 28288537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 38144536 - 38144716
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||    
T  38144536 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcataa--ttttggaaaataaattgagggttaggg 38144633  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||  ||||||||| ||||  ||||||||||||||| ||||    
T  38144634 tttgatgatgattctgaggggaatgggtattgatcatgttaattct-attgtaatgtaatgtttagaatgaaaacttaatctat 38144716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 28370055 - 28370234
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  28370055 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 28370152  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  28370153 ttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 28370234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 19512441 - 19512261
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  19512441 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggt 19512343  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||| ||| |||||  |||| || |||||||||||||  |||||| || ||||  ||||||||||||||| ||||    
T  19512342 ttgatgatgattttgaggggaatgggtattgatcatgttaattct-attgtaacgtaatgtttagaatgaaaacttaatctat 19512261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 22751197 - 22751021
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||    
T  22751197 ctaaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttaggg 22751100  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  22751099 tttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 22751021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 23528686 - 23528573
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  23528686 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttaggg 23528590  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  23528589 tttgatgatgattctga 23528573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 18407944 - 18408008
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  18407944 taaggtaagggtgagactatctctcaataatcataatatataatttctgaaaattgatctaattg 18408008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22438747 - 22438803
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  22438747 ctaaggtaagggtgagactatctctcaataatcataatgtataatttctgaaaattg 22438803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 23111200 - 23111264
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23111200 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23111264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19236955 - 19236900
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  19236955 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 19236900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22461211 - 22461158
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  22461211 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 22461158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 22467835 - 22467782
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||    
T  22467835 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaa 22467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 20781799 - 20781744
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||||| ||||| ||| |||||||||||||    
T  20781799 ctaaggtaagggtgggattatctttcaataattataatatatgatttctgaaaatt 20781744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 17021913 - 17021942
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaata 30  Q
    ||||||||||||||||||||||||||||||    
T  17021913 ctaaggtaagggtgagactatctctcaata 17021942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 10195 - 10376
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  10195 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttaggg 10293  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  10294 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 10376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 1525 - 1706
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| |||||||||    
T  1525 ctaaggtaagggtgggactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgtgggttaggg 1623  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  1624 tttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 1706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 44477678 - 44477498
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  44477678 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 44477581  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  44477580 tttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 44477498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 44492836 - 44492656
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  44492836 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 44492739  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  44492738 tttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 44492656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 8727735 - 8727913
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-tt 102  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||    
T  8727735 aggtaagggtgagattatccctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaagataaattgagggttagggttt 8727833  T
Q  103 gatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    || || |||||||| ||| |  |||| || |||||||||||||| ||||||||| |||| |||||||||||||||| ||||    
T  8727834 gacgatgattctgaggggtatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaacttaatctat 8727913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 23866670 - 23866494
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  23866670 ctaaggtaagggtgagactatctctcaataatcataatttataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 23866574  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||| ||| | ||||| |||| || ||||||||||||| |||||||| | |||| ||||||  ||||||||    
T  23866573 tttgatgatgattatgaagagaaatgggtaatgatcatgttaattctatttgtaatataatgttcagaatataaacttaa 23866494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 17054644 - 17054533
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-t 101  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||  |||  ||||||| |    
T  17054644 aaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatag-ttttggaaaataagatgaaagttagggtt 17054548  T
Q  102 tgatgacgattctga 116  Q
    |||||| ||||||||    
T  17054547 tgatgatgattctga 17054533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 23482053 - 23482117
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23482053 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23482117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 18614327 - 18614271
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  18614327 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattga 18614271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 39364975 - 39364919
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  39364975 taaggtaagggtgagactatctctcaataataatagtatagaatttctgaaaattga 39364919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 29643386 - 29643440
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||||| ||||| |||||||||||||| | |||||||||||||||    
T  29643386 taaggtaagggtgagattatctttcaataatcataatatgtaatttctgaaaatt 29643440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 14056563 - 14056619
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||    
T  14056563 ctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaaaattg 14056619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25112032 - 25111976
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||| ||| | | ||| ||||||||||||    
T  25112032 ctaaggtaagggtgagactatctctcaataataatagtatgtaaattctgaaaattg 25111976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 24320670 - 24320725
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  24320670 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 24320725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 27940953 - 27941034
Alignment:
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| |||| ||||||||||| |||| ||||    
T  27940953 ttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgttcagaatgaaaatttaatctat 27941034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 21931752 - 21931696
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  21931752 taaggtaagggtgaggctaactctcaatgattataatatataacttctgaaaattga 21931696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 6483772 - 6483593
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  6483772 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 6483675  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  6483674 ttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 6483593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 6487239 - 6487060
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||     
T  6487239 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaaaataaattgagggttagggt 6487142  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||| ||| |||||  |||| || |||||||||||||| |||||| || ||||  ||||||||||||||| ||||    
T  6487141 ttgatgatgattttgaggggaatgggtattgatcatgttaattctg-ttgtaacgtaatgtttagaatgaaaacttaatctat 6487060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 19661454 - 19661633
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg- 100  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||     
T  19661454 taaggtaagggtgagactttctctcgataatcataatctataatttctgaaaattgacctaattgc-atag-ttttggaagataaattgagggttagggt 19661551  T
Q  101 ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    ||||||| |||||||| |||||  |||| || |||||||||||||| ||||||||| ||||  ||||||||||||||| ||||    
T  19661552 ttgatgatgattctgaggggaatgggtattgatcatgttaattctg-ttgtaatgtaatgtttagaatgaaaacttaatctat 19661633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 26583882 - 26583715
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  26583882 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 26583786  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaa 171  Q
     ||||||| |||||||| |||||| |||| || ||||||||| | || |||||| ||||||| |||||||||    
T  26583785 cttgatgatgattctgaggggaaagggtaatgatcatgttaaatatg-ttgtaaagtgatgttcagaatgaa 26583715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 183
Target Start/End: Complemental strand, 23879060 - 23878883
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttagggttg 103  Q
    |||||||||||||||||||||||| |||| || || |||||||||  |||||||||||||||||   | |||  |||   ||||||||||||||||||||    
T  23879060 aggtaagggtgagactatctctcattaataattatatataatttcgaaaaattgacctaattgcttaaccttgaggat--taaattgagggttagggttg 23878963  T
Q  104 atgacgattctgacgggaa-atggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||| |||||||| |||||   |||| || ||||||||||| || |||||||||||||| |||||||||| ||||| ||||    
T  23878962 ttgatgattctgaggggaatggggtaatgatcatgttaattatg-ttgtaatgtgatgttcagaatgaaatcttaatctat 23878883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 5706023 - 5706106
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa 86  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||    
T  5706023 ctaaggtaagggtgagactatctctcattaatcataatctataattcctg-aaattgacctaattg-aatagtttttgaaaaataa 5706106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 23265197 - 23265133
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23265197 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 23280265 - 23280201
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  23280265 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 23280201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 63
Target Start/End: Complemental strand, 21908414 - 21908353
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaa 63  Q
    |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| ||||    
T  21908414 taaggtaagggtgagactatctctcaataatcatgatatataatttctgaaaattgatctaa 21908353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 23101463 - 23101643
Alignment:
Q  2 taaggtaagggtgagactatctctcaataat-cataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||| ||||  ||||| | ||||||| |||||||||||||||||    | |||  ||| |  ||||||||||||||||    
T  23101463 taaggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgtttaaccttgaggata--aaattgagggttaggg 23101560  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
     ||||||| |||||||| |||||  |||| || ||||||||||| || ||||||||||| || | |||||||| ||||| ||||    
T  23101561 tttgatgatgattctgaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgacgttcggaatgaaatcttaatctat 23101643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 23089057 - 23089235
Alignment:
Q  4 aggtaagggtgagactatctctcaataat-cataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-t 101  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| |  |||||||||||||||| |    
T  23089057 aggtaagggtgagactatctctcattaatagataatatttaatttcggaaaattgacctaattgcttaaccttgaggata--aaattgagggttagggtt 23089154  T
Q  102 tgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    |||||| |||||| | |||||  |||| || ||||||||||| || ||||||||||| || | |||||||| ||||| ||||    
T  23089155 tgatgatgattctaaggggaatgggtaatgatcatgttaattatg-ttgtaatgtgacgttcggaatgaaatcttaatctat 23089235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 24661632 - 24661576
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| ||||| || |||||||| |||||||||||||||||||    
T  24661632 taaggtaagggtgaggctaactctcgatgatcataatatataatttctgaaaattga 24661576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10632 - 10577
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  10632 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 10577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25180929 - 25180984
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  25180929 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 25180984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26885237 - 26885139
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||| || ||||| ||||||||| |||| ||||||||||||||||| | |||| || ||||| | ||||| || ||||||||  ||||||    
T  26885237 ctaaggtaagggtgggattatctttcaataatc-taatgtataatttctgaaaattaatctaa-tggaatagttcttggagaaaaaattgagaattaggg 26885140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23168298 - 23168351
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||| | |||||||| |||||||||||||||    
T  23168298 ctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23168351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23579555 - 23579608
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||| | |||||||| |||||||||||||||    
T  23579555 ctaaggtaagggtgggattatctttcattgatcataatgtataatttctgaaaa 23579608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 111938 - 111761
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaattgagggttagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||||||||||||    
T  111938 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaaattgacctaattgc-atag-ttttggaagataaattgagggttagg 111841  T
Q  100 g-ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    | ||||||| |||||||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  111840 gtttgatgatgattctgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 111761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 750 - 875
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  750 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-atagtttttggaaaataaattgagggttaggg 848  T
Q  101 -ttgatgacgattctgacgggaaatgg 126  Q
     ||||||| |||| ||| |||||||||    
T  849 tttgatgaggattatgaagggaaatgg 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 1233 - 1058
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  1233 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 1137  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||| ||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  1136 tttgatgaggattatgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 1058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 11397 - 11221
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaata-aattgagggttagg 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||| ||||||||||||||    
T  11397 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgc-ttag-ttttggaaaatagaattgagggttagg 11300  T
Q  100 g-ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    | ||||||| |||||||  |||||   ||| || |||||||||||||| |||||||||||||| || ||||||| |||||    
T  11299 gtttgatgatgattctggagggaatgagtaatgatcatgttaattctg-ttgtaatgtgatgttcaaaatgaaatcttaa 11221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 50234 - 50059
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  50234 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 50138  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     ||||||| |||| ||| ||||||| |||| || |||||||||||||  ||||||| | |||| ||||||||||||||||    
T  50137 tttgatgaggattatgaagggaaatgggtaatgatcatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 50059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 346 - 206
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  346 ctaaggtaagggtgagactatctctcaataaccataatctataatttctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 250  T
Q  101 -ttgatgacgattctgacgggaaatggtactggtcatgttaatt 143  Q
     ||||||| |||||||| |||||  |||| || |||||||||||    
T  249 tttgatgatgattctgaggggaatgggtaatgatcatgttaatt 206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8045832 - 8046007
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||    
T  8045832 ctaaggtaagggtgagactatctctcgataatcataatctataatttctg-aaattgacctaattgc-atag-ttttggaaaataaattgagggttaggg 8045928  T
Q  101 -ttgatgacgattctgacgggaaat-ggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
     |||| ||  ||||||| ||||||| ||||  | | |||||||||||  ||||||| | |||| ||||||||||||||||    
T  8045929 tttgacgagaattctgaagggaaatgggtaaagataatgttaattct-cttgtaatataatgttcagaatgaaaacttaa 8046007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 11848169 - 11847987
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttg------gaaaataaattgaggg 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | || |||| |||||       ||||| |||||||||    
T  11848169 ctaaggtaagggtgagactatctctcaataatcataatctataattcctgaaaattgacctagtggc-atag-ttttgaaaaattaaaatcaattgaggg 11848072  T
Q  95 ttaggg-ttgatgacgattctgacg-ggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    |||||| |||||||||||||||| | ||||  |||| || |||||||||| || ||| |||| | |||| ||||||||||||||||    
T  11848071 ttagggtttgatgacgattctgaagaggaatgggtaatgatcatgttaatcct-tttataatataatgttcagaatgaaaacttaa 11847987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 53483760 - 53483677
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||    
T  53483760 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatagtttttgaaaaataa 53483677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 15408195 - 15408139
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  15408195 ctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 15408139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 8834951 - 8834895
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  8834951 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 8834895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 13888697 - 13888641
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  13888697 taaggtaagggtgaggctaactctcaatgatcataatgtataatttctgaaaattga 13888641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 14486713 - 14486661
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||||||||  ||||| |||||||| |||||||||||||||||    
T  14486713 aggtaagggtgagactatccttcaatgatcataatatataatttctgaaaatt 14486661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 15245271 - 15245215
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| ||| |||| |||||||||||||||||||    
T  15245271 taaggtaagggtgaggctaactctcaatgatcgtaatatataatttctgaaaattga 15245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 22724691 - 22724742
Alignment:
Q  7 taagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    |||||||||||||||||||||||||| ||| | || ||||||||||||||||    
T  22724691 taagggtgagactatctctcaataataatagtatagaatttctgaaaattga 22724742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 15308176 - 15308120
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    |||| |||||||||| ||| |||||||| ||| |||| |||||||||||||||||||    
T  15308176 taagttaagggtgaggctaactctcaatgatcgtaatatataatttctgaaaattga 15308120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16146830 - 16146885
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  16146830 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 16146885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27906321 - 27906266
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||| |||||||| || ||||| ||||| |||||||| |||||||||||||||||    
T  27906321 ctaagataagggtgggattatctttcaatgatcataatgtataatttctgaaaatt 27906266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 15069811 - 15069781
Alignment:
Q  2 taaggtaagggtgagactatctctcaataat 32  Q
    |||||||||||||||||||||||||||||||    
T  15069811 taaggtaagggtgagactatctctcaataat 15069781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 32
Target Start/End: Complemental strand, 15076411 - 15076381
Alignment:
Q  2 taaggtaagggtgagactatctctcaataat 32  Q
    |||||||||||||||||||||||||||||||    
T  15076411 taaggtaagggtgagactatctctcaataat 15076381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14912138 - 14912081
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||| |||||| |||||||| ||  |||| ||||| |||||||||||||    
T  14912138 ctaaggtaagggttagactaactctcaatgattgtaatatataacttctgaaaattga 14912081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15747556 - 15747592
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataa 37  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  15747556 ctaaggtaagggtgagactaactctcaataattataa 15747592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 30913 - 30846
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30913 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca 30846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1897 - 2072
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaattgagggttagg 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  1897 ctaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaaattgacctaattg-tatag-ttttggaaaataatttgagggttagg 1994  T
Q  100 g-ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    | ||||||| |||| |||  ||||  |||| || | |||||||||||  ||||||| | |||| || |||||||||||||    
T  1995 gtttgatgatgattttga-tggaatgggtaatgattatgttaattct-cttgtaatttaatgttcataatgaaaacttaa 2072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 8574 - 8749
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctg-aaaattgacctaattgcaatagcttttggaaaataaattgagggttagg 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||  |||| ||||||||||||| ||||||||||||    
T  8574 ctaaggtaagggtgagactatatctcaataatcataatctataatttctgaaaaattgacctaattg-tatag-ttttggaaaataatttgagggttagg 8671  T
Q  100 g-ttgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaa 178  Q
    | ||||||| |||| |||  ||||  |||| || | |||||||||||  ||||||| | |||| || |||||||||||||    
T  8672 gtttgatgatgattatga-tggaatgggtaatgattatgttaattct-cttgtaatttaatgttcaaaatgaaaacttaa 8749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 987 - 920
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  987 ctaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgca 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8132 - 8065
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgca 68  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8132 ctaaggtaagggtgagactatctctcaataatcataatctatagtttctgaaaattgacctaattgca 8065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 1732 - 1845
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  1732 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatag-ttttggaaaataatatgaaagttaggg 1828  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  1829 tttgatgatgattctga 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 5755 - 5868
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||||||||||  |||  |||||||    
T  5755 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatag-ttttggaaaataatatgaaagttaggg 5851  T
Q  101 -ttgatgacgattctga 116  Q
     ||||||| ||||||||    
T  5852 tttgatgatgattctga 5868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 45274 - 45357
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataa 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||| ||||| |||||||    
T  45274 ctaaggtaagggtgagactatctctcaataatcataatctataattcctg-aaattgacctaattg-aatagtttttgaaaaataa 45357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 16875 - 16811
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  16875 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 16811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 116951 - 116887
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |||||||    
T  116951 taaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattgatctaattg 116887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 60474 - 60441
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcata 36  Q
    |||||||||||||||||| |||||||||||||||    
T  60474 aaggtaagggtgagactaactctcaataatcata 60441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 3295 - 3474
Alignment:
Q  4 aggtaagggtgagactatctctcaataat-cataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-t 101  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| |  |||||||||||||||| |    
T  3295 aggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgcttaaccttggggata--aaattgagggttagggtt 3392  T
Q  102 tgatgacgattctgacgggaaatggtactg-gtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    |||||| |||||||| |||||  |||| ||  ||||||||||| || |||||||||||||| |||||||||| ||||| ||||    
T  3393 tgatgatgattctgaggggaatgggtaatgaatcatgttaattttg-ttgtaatgtgatgttcagaatgaaatcttaatctat 3474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 183
Target Start/End: Original strand, 3624 - 3802
Alignment:
Q  4 aggtaagggtgagactatctctcaataat-cataatctataatttctgaaaattgacctaattgcaatagcttttggaaaataaattgagggttaggg-t 101  Q
    |||||||||||||||||||||||| ||||  ||||| | ||||||| ||||||||||||||||||   | |||  ||| |  |||||||||||||||| |    
T  3624 aggtaagggtgagactatctctcattaatagataatatgtaatttcggaaaattgacctaattgcttaaccttgaggata--aaattgagggttagggtt 3721  T
Q  102 tgatgacgattctgacgggaaatggtactggtcatgttaattctgtttgtaatgtgatgtccagaatgaaaacttaacctat 183  Q
    |||||| |||||||| ||| |  |||| || ||||||||||| || |||||||||||||| | |||||||| ||||| ||||    
T  3722 tgatgatgattctgagggggatgggtaatgatcatgttaattatg-ttgtaatgtgatgttcggaatgaaatcttaatctat 3802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 8 - 72
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  8 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 72  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17699 - 17643
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  17699 ctaaggtaagggtgagactatctctcaataaccataatgtataatttctgaaaattg 17643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 13687 - 13623
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||| |||||||    
T  13687 taaggtaagggtgagactatctctcaataatcttaatacataatttctgaaaattgatctaattg 13623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 40531 - 40587
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  40531 ctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 40587  T

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Target: scaffold0020 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 101928 - 101992
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    ||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||||||    
T  101928 taaggtaagggtgagactatctctcaataatcatagtatataattcctgaaaattgatctaattg 101992  T

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Target: scaffold0019 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 135529 - 135473
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  135529 ctaaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaattg 135473  T

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Target: scaffold0235 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 22594 - 22646
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcataatctataatttctgaaaat 55  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  22594 aaggtaagggtgagactatctctcaataatcatagtatataatttctgaaaat 22646  T

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Target: scaffold0124 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 34276 - 34331
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||    
T  34276 taaggtaagggtgagactatctctcgataatcatagtatataatttctgaaaattg 34331  T

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Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35438 - 35495
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||| |||||| |||||||| ||  |||| ||||| |||||||||||||    
T  35438 ctaaggtaagggtaagactaactctcaatgattgtaatgtataacttctgaaaattga 35495  T

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Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 12352 - 12296
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||    
T  12352 taaggtaagggtgaggctaactctcaatgatcataatatataatttctgaaaattga 12296  T

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Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 1441 - 1378
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaatt 65  Q
    |||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||| ||||||    
T  1441 taaggtaagggtgagactatctttcaatgatcatgatatataatttttgaaaattgatctaatt 1378  T

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Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 14997 - 15052
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattg 57  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  14997 taaggtaagggtgagactaactctcaatgatcttaatatataatttctgaaaattg 15052  T

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Target: scaffold0815 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 53
Target Start/End: Complemental strand, 1504 - 1453
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaa 53  Q
    ||||||||||||||||||| |||||||| ||| |||| ||||||||||||||    
T  1504 taaggtaagggtgagactaactctcaatgatcttaatgtataatttctgaaa 1453  T

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Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 9391 - 9336
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  9391 ctaaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 9336  T

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Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 10294 - 10239
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||| |||||  ||||||||||||| | |||||||||||||||    
T  10294 ctaaggtaagggtgagattatcttccaataatcataatatgtaatttctgaaaatt 10239  T

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Target: scaffold0096 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 39508 - 39563
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    |||||||||||||| ||| |||||||| |||||||| ||||||||| |||||||||    
T  39508 aaggtaagggtgaggctaactctcaatgatcataatatataatttcagaaaattga 39563  T

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Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 135493 - 135438
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||| |||||| ||||| |||||| ||||||| |||||||||||||||||    
T  135493 ctaaggtaagcgtgagattatctttcaatagtcataatatataatttctgaaaatt 135438  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 493028 - 493082
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||    
T  493028 ctaaggtaagggtgagattatctttcaataatc-taatgtataatttctgaaaatt 493082  T

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Target: scaffold1318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Original strand, 1913 - 1967
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||||| || ||||| |||||| ||||||| |||||||||||||||||    
T  1913 taaggtaagggtgggattatctttcaatagtcataatatataatttctgaaaatt 1967  T

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Target: scaffold0609 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 5857 - 5922
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattgacctaattg 66  Q
    |||||||||||||| || ||||| ||||| || ||||| ||||||||||||||||| | |||||||    
T  5857 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaattaatctaattg 5922  T

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Target: scaffold0335 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 2628 - 2684
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  2628 taaggtaagggtgaggctaactctcaatgattataatatataacttctgaaaattga 2684  T

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Target: scaffold0261 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 23569 - 23624
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| | ||| |||||||| |||||||||||||||||    
T  23569 ctaaggtaagggtgggattatctttgaatgatcataatgtataatttctgaaaatt 23624  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 79490 - 79545
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    |||||||||||||| || ||||| |||||| ||||||| | |||||||||||||||    
T  79490 ctaaggtaagggtgggattatctttcaatagtcataatatgtaatttctgaaaatt 79545  T

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Target: scaffold2054 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 770 - 717
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| ||| |||| |||||||||||||||    
T  770 ctaaggtaagggtgggattatctttcaatgatcttaatatataatttctgaaaa 717  T

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Target: scaffold0481 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 676 - 721
Alignment:
Q  3 aaggtaagggtgagactatctctcaataatcataatctataatttc 48  Q
    |||||||||||||||||| |||||||| ||| |||| |||||||||    
T  676 aaggtaagggtgagactaactctcaatgatcttaatgtataatttc 721  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 13894 - 13947
Alignment:
Q  1 ctaaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    |||||||||||||| || ||||| ||||| || ||||| |||||||||||||||    
T  13894 ctaaggtaagggtgggattatctttcaatgattataatatataatttctgaaaa 13947  T

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Target: scaffold0600 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 788 - 732
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||| ||||||| ||| |||||||| || ||||| ||||| |||||||||||||    
T  788 taaggtaggggtgaggctaactctcaatgattataatatataacttctgaaaattga 732  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 11681 - 11630
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataa--tctataatttctga 51  Q
    ||||||||||||||||||| ||||||||||| ||||  | ||||||||||||    
T  11681 taaggtaagggtgagactaactctcaataattataaattatataatttctga 11630  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 73337 - 73285
Alignment:
Q  4 aggtaagggtgagactatctctcaataatcataatctataatttctgaaaatt 56  Q
    ||||||||||| || ||||| ||||| |||||||| |||||||| ||||||||    
T  73337 aggtaagggtgggattatctttcaatgatcataatgtataatttatgaaaatt 73285  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 121958 - 121902
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| || ||||| |||||  ||||||||||||    
T  121958 taaggtaagggtgaggctaactctcaatgattataatatataaaatctgaaaattga 121902  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 132834 - 132778
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaattga 58  Q
    ||||||||||||||| ||| |||||||| || ||||| |||||  ||||||||||||    
T  132834 taaggtaagggtgaggctaactctcaatgattataatatataaaatctgaaaattga 132778  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Complemental strand, 69801 - 69749
Alignment:
Q  2 taaggtaagggtgagactatctctcaataatcataatctataatttctgaaaa 54  Q
    ||||||||||||||||||| || ||||| ||| |||| |||||||| ||||||    
T  69801 taaggtaagggtgagactaactttcaatgatcttaatatataatttatgaaaa 69749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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