View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0410_low_36 (Length: 258)
Name: NF0410_low_36
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_low_36 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 99 - 224
Target Start/End: Complemental strand, 55211499 - 55211374
Alignment:
| Q |
99 |
gggttgttgtagcattacttgcttaaaaaacatctcgtcagaatttcgtcattcaaatggagaagatgaaaatcgttttgtataaatttatccatctgga |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
55211499 |
gggttgttgtagcattacttgcttaaaaaacatctcgtcagaatttcgtcattcaaatggagaagatgaatatcgttttgtataaatttatccatctgga |
55211400 |
T |
|
| Q |
199 |
gaaaagattatattttccaccatctg |
224 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
55211399 |
gaaaagattatattttccaccatctg |
55211374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 607 times since January 2019
Visitors: 3061