View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0410_low_39 (Length: 250)
Name: NF0410_low_39
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_low_39 |
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| [»] scaffold0458 (2 HSPs) |
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| [»] chr1 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: scaffold0458 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 12570 - 12790
Alignment:
| Q |
30 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12570 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
12669 |
T |
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| Q |
130 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12670 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
12769 |
T |
|
| Q |
230 |
gctccacttcttagtgcaact |
250 |
Q |
| |
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||||||||||||||||||||| |
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| T |
12770 |
gctccacttcttagtgcaact |
12790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 2664 - 2749
Alignment:
| Q |
167 |
gaatgtgtatacaatgtgtcc-tgata-cccttcaaagctacaactatagaaggtggacatatctgctccacttcttagtgcaact |
250 |
Q |
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||||| |||||||||| |||| ||||| |||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2664 |
gaatgggtatacaatgggtccctgataacccttcaaaggtaccagtataggaggtggacatatctgctccacttcttagtgcaact |
2749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 24061035 - 24061255
Alignment:
| Q |
30 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
129 |
Q |
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| T |
24061035 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
24061134 |
T |
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| Q |
130 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24061135 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
24061234 |
T |
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| Q |
230 |
gctccacttcttagtgcaact |
250 |
Q |
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||||||||||||||||||||| |
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| T |
24061235 |
gctccacttcttagtgcaact |
24061255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 39451092 - 39450872
Alignment:
| Q |
30 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39451092 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
39450993 |
T |
|
| Q |
130 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39450992 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
39450893 |
T |
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| Q |
230 |
gctccacttcttagtgcaact |
250 |
Q |
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||||||||||||||||||||| |
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| T |
39450892 |
gctccacttcttagtgcaact |
39450872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 39460479 - 39460259
Alignment:
| Q |
30 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
129 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39460479 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
39460380 |
T |
|
| Q |
130 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39460379 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
39460280 |
T |
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| Q |
230 |
gctccacttcttagtgcaact |
250 |
Q |
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||||||||||||||||||||| |
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| T |
39460279 |
gctccacttcttagtgcaact |
39460259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 39471964 - 39471744
Alignment:
| Q |
30 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471964 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
39471865 |
T |
|
| Q |
130 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39471864 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
39471765 |
T |
|
| Q |
230 |
gctccacttcttagtgcaact |
250 |
Q |
| |
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||||||||||||||||||||| |
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| T |
39471764 |
gctccacttcttagtgcaact |
39471744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 745222 - 745266
Alignment:
| Q |
73 |
ataaatgttacaattttgcaaaacaactgcaccatttccaaatat |
117 |
Q |
| |
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|||||||||||| ||||| ||||| |||||| ||||||||||||| |
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| T |
745222 |
ataaatgttacatttttgaaaaactactgcagcatttccaaatat |
745266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 44488559 - 44488779
Alignment:
| Q |
30 |
gagctgtgatggaattgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgt |
129 |
Q |
| |
|
|||| ||||||| ||||||||||||| || ||||| |||||||| || || || ||||||||||||||||| | ||||||||||| || || | ||| |
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| T |
44488559 |
gagcggtgatgggattgaattgtccatgtaagggaagacgaggatatatattgcagttttgcaaaacaactgcggcgtttccaaatataaaatctattgt |
44488658 |
T |
|
| Q |
130 |
tccgtatatatcgcattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatct |
229 |
Q |
| |
|
||| || || ||||||||| |||||| |||||||| ||||||| ||| | ||||| || |||||||||||||| |||| |||||| ||||||||||| |
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| T |
44488659 |
tccataaatgtcgcattctttataaaattgccttagtgaatgtgcatagagagtgtcttggtacccttcaaagctgcaacgatagaaactggacatatct |
44488758 |
T |
|
| Q |
230 |
gctccacttcttagtgcaact |
250 |
Q |
| |
|
|| |||||||| | ||||||| |
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| T |
44488759 |
gccccacttctcattgcaact |
44488779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 234
Target Start/End: Original strand, 44474399 - 44474589
Alignment:
| Q |
44 |
ttgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcgc |
143 |
Q |
| |
|
|||||||||||||| ||||| || ||||| ||||| ||| ||| |||||||| ||| |||||||||||||||||||||||||||| || || || | |
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|
| T |
44474399 |
ttgaattgtccactgttgggaagtcggggatatatgttgcaagattgtaaaacaacagcagcatttccaaatatgaagtcaactgttccatagatgtcac |
44474498 |
T |
|
| Q |
144 |
attctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttcaaagctacaactatagaaggtggacatatctgctcc |
234 |
Q |
| |
|
|||| |||||||| ||||| | |||||||| ||||| || || ||||| ||||| ||||| || || ||||||||||||| ||| ||||| |
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|
| T |
44474499 |
attcgcgataaaattgcctcatggaatgtgtgtacaaagtatcttgatagccttcgaagctgcagctgtagaaggtggacaaatcagctcc |
44474589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 198
Target Start/End: Original strand, 44463822 - 44463977
Alignment:
| Q |
43 |
attgaattgtccacttagcggaaggcgaggataaatgttacaattttgcaaaacaactgcaccatttccaaatatgaagtcaactgttccgtatatatcg |
142 |
Q |
| |
|
||||||||||||||| | ||||| || ||||| | |||||||||||| |||||||| | ||||||| |||||||| || |||||||| || || || |
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| T |
44463822 |
attgaattgtccactcattggaagacgtggatagaggttacaattttggaaaacaaccttagcatttccgaatatgaaatctactgttccataaatgtca |
44463921 |
T |
|
| Q |
143 |
cattctcgataaaactgccttagagaatgtgtatacaatgtgtcctgatacccttc |
198 |
Q |
| |
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||||||| || || || ||||| |||||||| || || ||||| || |||||||| |
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|
| T |
44463922 |
cattctctgtagaattgtcttagtgaatgtgtgtataacgtgtcttggtacccttc |
44463977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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