View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0410_low_7 (Length: 346)

Name: NF0410_low_7
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0410_low_7
NF0410_low_7
[»] chr2 (20 HSPs)
chr2 (168-333)||(16816548-16816713)
chr2 (168-333)||(16855705-16855870)
chr2 (168-299)||(2020692-2020823)
chr2 (168-337)||(21067134-21067304)
chr2 (35-167)||(27513699-27513831)
chr2 (168-290)||(21341193-21341316)
chr2 (168-295)||(36781432-36781559)
chr2 (168-295)||(15853395-15853522)
chr2 (168-295)||(42930630-42930756)
chr2 (168-257)||(13901249-13901338)
chr2 (168-290)||(2158468-2158590)
chr2 (168-290)||(2164884-2165006)
chr2 (168-250)||(29485740-29485822)
chr2 (170-257)||(43268707-43268794)
chr2 (168-290)||(12951655-12951777)
chr2 (168-218)||(34834127-34834177)
chr2 (168-218)||(34840571-34840621)
chr2 (168-218)||(45012840-45012890)
chr2 (168-258)||(11909264-11909355)
chr2 (170-219)||(34744643-34744692)
[»] chr1 (27 HSPs)
chr1 (168-333)||(1175439-1175604)
chr1 (168-324)||(26622306-26622462)
chr1 (168-333)||(41304741-41304906)
chr1 (168-295)||(28996852-28996979)
chr1 (168-295)||(29002568-29002695)
chr1 (168-333)||(23761563-23761727)
chr1 (57-167)||(21859703-21859813)
chr1 (168-260)||(1115277-1115370)
chr1 (168-259)||(44242201-44242293)
chr1 (168-295)||(45023380-45023507)
chr1 (168-259)||(4600373-4600465)
chr1 (184-260)||(32798583-32798660)
chr1 (168-259)||(35085846-35085938)
chr1 (168-259)||(43687476-43687568)
chr1 (98-168)||(1390392-1390462)
chr1 (168-280)||(9869941-9870054)
chr1 (168-337)||(31073185-31073351)
chr1 (168-290)||(42092753-42092875)
chr1 (168-290)||(45016638-45016760)
chr1 (42-167)||(22916284-22916409)
chr1 (168-218)||(39052633-39052683)
chr1 (168-218)||(39059005-39059055)
chr1 (168-258)||(23252190-23252281)
chr1 (168-218)||(6239501-6239551)
chr1 (168-258)||(11912558-11912649)
chr1 (168-254)||(44917236-44917322)
chr1 (201-258)||(9316800-9316857)
[»] scaffold0053 (2 HSPs)
scaffold0053 (168-333)||(71283-71448)
scaffold0053 (168-290)||(50547-50669)
[»] chr7 (27 HSPs)
chr7 (168-333)||(19090640-19090805)
chr7 (168-295)||(15949993-15950120)
chr7 (168-295)||(26602831-26602958)
chr7 (168-258)||(15915472-15915562)
chr7 (57-167)||(48629425-48629535)
chr7 (168-260)||(33849924-33850017)
chr7 (168-295)||(14288565-14288692)
chr7 (168-295)||(14299750-14299877)
chr7 (168-295)||(23613233-23613360)
chr7 (168-257)||(6020140-6020229)
chr7 (168-280)||(22853480-22853592)
chr7 (168-256)||(21643363-21643451)
chr7 (168-295)||(3923345-3923472)
chr7 (168-295)||(9642165-9642292)
chr7 (168-254)||(36876400-36876486)
chr7 (168-257)||(8184680-8184768)
chr7 (168-257)||(8192240-8192328)
chr7 (168-299)||(2447505-2447636)
chr7 (168-290)||(1379804-1379926)
chr7 (168-290)||(5049155-5049277)
chr7 (168-290)||(6796295-6796417)
chr7 (168-260)||(37026562-37026654)
chr7 (170-290)||(8141703-8141823)
chr7 (168-218)||(48346409-48346459)
chr7 (168-218)||(48352793-48352843)
chr7 (168-260)||(39433743-39433835)
chr7 (168-209)||(1947980-1948021)
[»] chr5 (18 HSPs)
chr5 (168-295)||(29413917-29414044)
chr5 (170-333)||(42151666-42151829)
chr5 (168-295)||(5877063-5877190)
chr5 (168-295)||(22314674-22314801)
chr5 (168-295)||(22360808-22360935)
chr5 (168-277)||(4974411-4974521)
chr5 (168-295)||(25893897-25894024)
chr5 (168-295)||(40957865-40957992)
chr5 (168-218)||(34356580-34356630)
chr5 (168-218)||(34358371-34358421)
chr5 (170-258)||(30579505-30579594)
chr5 (168-218)||(2958717-2958767)
chr5 (168-218)||(2967186-2967236)
chr5 (168-218)||(29974816-29974866)
chr5 (168-218)||(29981319-29981369)
chr5 (168-218)||(30021776-30021826)
chr5 (168-258)||(2439631-2439722)
chr5 (168-258)||(12505064-12505154)
[»] scaffold0510 (2 HSPs)
scaffold0510 (168-333)||(8102-8267)
scaffold0510 (168-333)||(1869-2034)
[»] chr3 (18 HSPs)
chr3 (35-168)||(27437912-27438048)
chr3 (168-333)||(32747214-32747379)
chr3 (168-299)||(24179918-24180049)
chr3 (168-295)||(25894072-25894199)
chr3 (72-169)||(9775127-9775223)
chr3 (168-257)||(6037125-6037215)
chr3 (170-258)||(43995910-43995999)
chr3 (176-259)||(4310753-4310837)
chr3 (168-337)||(10940521-10940691)
chr3 (168-290)||(27501210-27501332)
chr3 (168-258)||(2786554-2786645)
chr3 (169-295)||(9569770-9569897)
chr3 (168-259)||(23069334-23069426)
chr3 (168-258)||(43932409-43932500)
chr3 (168-337)||(47441670-47441840)
chr3 (172-218)||(9576350-9576396)
chr3 (168-257)||(20650357-20650447)
chr3 (170-218)||(460794-460842)
[»] chr4 (15 HSPs)
chr4 (35-158)||(4103226-4103350)
chr4 (168-295)||(7781170-7781297)
chr4 (168-259)||(16406190-16406282)
chr4 (168-295)||(8104726-8104853)
chr4 (168-295)||(13594953-13595080)
chr4 (168-295)||(37367560-37367687)
chr4 (168-295)||(27591156-27591283)
chr4 (168-295)||(55462022-55462149)
chr4 (168-295)||(30239071-30239198)
chr4 (168-249)||(30210841-30210923)
chr4 (168-257)||(17457701-17457789)
chr4 (168-259)||(37355620-37355712)
chr4 (168-290)||(41373843-41373965)
chr4 (168-252)||(36754098-36754182)
chr4 (201-258)||(54300894-54300951)
[»] chr8 (16 HSPs)
chr8 (35-167)||(15327849-15327981)
chr8 (35-167)||(15508218-15508350)
chr8 (168-259)||(1239058-1239150)
chr8 (168-260)||(15013235-15013328)
chr8 (168-259)||(12769743-12769835)
chr8 (168-295)||(36424979-36425106)
chr8 (168-259)||(16709955-16710047)
chr8 (168-250)||(11357467-11357549)
chr8 (168-290)||(6463819-6463941)
chr8 (168-290)||(7312204-7312326)
chr8 (168-290)||(36004727-36004849)
chr8 (201-260)||(15013432-15013492)
chr8 (172-290)||(8012563-8012681)
chr8 (172-257)||(36021024-36021109)
chr8 (168-258)||(45067711-45067802)
chr8 (168-290)||(36076822-36076944)
[»] scaffold0513 (1 HSPs)
scaffold0513 (168-333)||(11356-11521)
[»] scaffold0060 (1 HSPs)
scaffold0060 (168-260)||(16004-16097)
[»] scaffold0186 (1 HSPs)
scaffold0186 (72-171)||(2725-2824)
[»] chr6 (24 HSPs)
chr6 (168-299)||(4737625-4737756)
chr6 (72-167)||(14958902-14958997)
chr6 (168-299)||(4668642-4668773)
chr6 (54-170)||(8877823-8877938)
chr6 (168-259)||(13671099-13671191)
chr6 (168-257)||(4187542-4187631)
chr6 (168-257)||(31548752-31548841)
chr6 (168-259)||(9864046-9864138)
chr6 (168-259)||(21261857-21261949)
chr6 (168-295)||(7061753-7061880)
chr6 (168-295)||(7068939-7069066)
chr6 (168-257)||(34710845-34710934)
chr6 (168-278)||(27670887-27670997)
chr6 (168-290)||(1427666-1427788)
chr6 (168-290)||(4019478-4019600)
chr6 (168-290)||(4025904-4026026)
chr6 (168-290)||(4717783-4717905)
chr6 (168-257)||(32327769-32327858)
chr6 (168-290)||(34649657-34649779)
chr6 (168-290)||(34656108-34656230)
chr6 (169-218)||(31128614-31128663)
chr6 (50-167)||(33596407-33596524)
chr6 (176-258)||(1166775-1166858)
chr6 (201-258)||(18766551-18766608)
[»] scaffold0475 (1 HSPs)
scaffold0475 (168-299)||(8638-8769)
[»] scaffold0343 (1 HSPs)
scaffold0343 (168-280)||(3509-3621)
[»] scaffold0043 (1 HSPs)
scaffold0043 (168-290)||(4248-4370)
[»] scaffold0003 (1 HSPs)
scaffold0003 (48-164)||(111003-111119)
[»] scaffold0131 (1 HSPs)
scaffold0131 (88-145)||(10296-10353)
[»] scaffold1487 (1 HSPs)
scaffold1487 (170-258)||(1390-1478)
[»] scaffold0202 (1 HSPs)
scaffold0202 (170-258)||(6945-7034)


Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 168 - 333
Target Start/End: Complemental strand, 16816713 - 16816548
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  16816713 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcaagtacatccattc 16816614  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  16816613 gccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 16816548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 168 - 333
Target Start/End: Complemental strand, 16855870 - 16855705
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  16855870 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcaagtacatccattc 16855771  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  16855770 gccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 16855705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 2020823 - 2020692
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||   |||    
T  2020823 attcgtcatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctaactcgcctcgcgagtatacatattc 2020724  T
Q  268 gccatggtgagtttgctcgcctttcactagcc 299  Q
    ||||||| ||||| ||||||||| ||||||||    
T  2020723 gccatggcgagttcgctcgccttccactagcc 2020692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 168 - 337
Target Start/End: Complemental strand, 21067304 - 21067134
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||| ||| || ||    
T  21067304 attcgccatggcgagttgcggttccttcaccattgggtttgtgccacgtcagctgtgaagagtttagaccgccataactcgcctcgcgagcacatccatt 21067205  T
Q  267 cgccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctctctg 337  Q
    |||||||| |||| ||||||||||||||  |||  |||||  ||||| || |||||| |||||||||||||    
T  21067204 cgccatggcgagtgtgctcgcctttcacccgccatgcgagttgagggagaatgaaaatctgatgctctctg 21067134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 27513699 - 27513831
Alignment:
Q  35 taattaattaaccaaaaaac-ctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcaga 133  Q
    |||||||||||||||||||  |||||||||||||   |||||||||||| |   ||||||||||||||||||||||||||||||| ||||||||||||||    
T  27513699 taattaattaaccaaaaaaatctgcgacggttcatgctaacagccgcaacatt-gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcaga 27513797  T
Q  134 tgaagtgtcgcaatttgcagtttttcttgtagtg 167  Q
    ||||||||||||||||||||||||||||||||||    
T  27513798 tgaagtgtcgcaatttgcagtttttcttgtagtg 27513831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 21341316 - 21341193
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |||| ||   |||||||||||||||||||||||||  | ||    
T  21341316 attcgccatggcgagttgaggttccttcaccattggttttgtgccacgtcagctgtgaggagtctaagtcgccctaactcgcctcgcgagtacaatcatt 21341217  T
Q  267 cgccatggtgagtttgctcgcctt 290  Q
    |||||||| ||||| |||||||||    
T  21341216 cgccatggcgagttggctcgcctt 21341193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 36781559 - 36781432
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  36781559 attcgccagggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagagggtaaaccgccctaactcgcctcgcgagtaaaatcattc 36781460  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  36781459 gccatggcgagtgggctcgccttccact 36781432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 15853395 - 15853522
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  15853395 attcgccagggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaaatcattc 15853494  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
     |||||| ||||  ||||||||| ||||    
T  15853495 accatggcgagtgggctcgccttccact 15853522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 42930756 - 42930630
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  42930756 attcgccagggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggcta-accgccctaactcgcctcgcgagtaaaatcattc 42930658  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  42930657 gccatggcgagtgggctcgccttccact 42930630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 13901338 - 13901249
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||||||| |||||| | | || |||||| | |||||||||||||||    
T  13901338 attcaccatggcgagttgaagttacttccccattgggtttgtgccacgtcagctgtgaggggctaaaccgccttcactcgcctcgcgagt 13901249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 2158468 - 2158590
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  2158468 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 2158567  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  2158568 gccatggcgagtaagctcgcctt 2158590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 2164884 - 2165006
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  2164884 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 2164983  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  2164984 gccatggcgagtaagctcgcctt 2165006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 29485740 - 29485822
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcct 250  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || || ||||||||||||||    
T  29485740 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaactgccctaactcgcct 29485822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 257
Target Start/End: Original strand, 43268707 - 43268794
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaaga-gttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||| | || |||||| | |||||||||||||||    
T  43268707 tcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgt-aagaggctaaaccgccttcactcgcctcgcgagt 43268794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 12951655 - 12951777
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  12951655 attcgtcatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 12951754  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  12951755 gccatggcgagtaagctcgcctt 12951777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 34834177 - 34834127
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34834177 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 34834127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 34840621 - 34840571
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34840621 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 34840571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 45012840 - 45012890
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  45012840 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 45012890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 11909355 - 11909264
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttaga-ccgccctaactcgcctcgcgagta 258  Q
    ||||||||||| ||||||  ||| ||||| || ||||||| |||||||||| || ||| |||||  | ||||||||||||||||||||||||    
T  11909355 attcgccatggtgagttgctgttacttcatcagtgggtttctgccacgtcagctctgaggagttttagccgccctaactcgcctcgcgagta 11909264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 219
Target Start/End: Complemental strand, 34744692 - 34744643
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcat 219  Q
    ||||||||||||| |||  || |||||||||||||||| |||||||||||    
T  34744692 tcgccatggcgaggtgagcttgcttcaccattgggtttctgccacgtcat 34744643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 1175439 - 1175604
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||    
T  1175439 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcaagtacatccattc 1175538  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  1175539 gccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 1175604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 168 - 324
Target Start/End: Original strand, 26622306 - 26622462
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||    
T  26622306 attcgccatggtgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcacctcgcgagtacatccattc 26622405  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaa 324  Q
    ||||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||    
T  26622406 gccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaa 26622462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 168 - 333
Target Start/End: Complemental strand, 41304906 - 41304741
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| || |||    
T  41304906 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacatcatctgtgaagagttaaaccgccctaactcccctcgcgagtacatccattc 41304807  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
     |||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  41304806 tccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 41304741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 28996852 - 28996979
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| || | |||    
T  28996852 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctcactcgcctcgcgagtagacacattc 28996951  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    | ||||| ||||| ||||||||| ||||    
T  28996952 gtcatggcgagttggctcgccttccact 28996979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 29002568 - 29002695
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| || | |||    
T  29002568 attcgccatggcgagttggagttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctcactcgcctcgcgagtagacacattc 29002667  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    | ||||| ||||| ||||||||| ||||    
T  29002668 gtcatggcgagttggctcgccttccact 29002695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 168 - 333
Target Start/End: Complemental strand, 23761727 - 23761563
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||  | ||||||||||||||||||||||||||| | || |||    
T  23761727 attcgccatggcgagttgaggttacttcaccattgggtttgtgccacgtcaactatgaagcttaagaccgccctaactcgcctcgcgagtaaatccattc 23761628  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||||||||  |||| |||| |||| |||  |||||  |||||||| | |||||||| |||||    
T  23761627 gccatggtgagtaagctcaccttccactcgccatgcgagttgagggcgaat-aaaaactggtgctc 23761563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 57 - 167
Target Start/End: Original strand, 21859703 - 21859813
Alignment:
Q  57 gcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcagttt 156  Q
    ||||||||||| |  ||||||||||| ||| |||||||||||||| ||||||||||||| ||| ||||| ||||||||||||||||||||  ||||||||    
T  21859703 gcgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaaggttcgcagatgaagtgtcgcaaaatgcagttt 21859802  T
Q  157 ttcttgtagtg 167  Q
    |||||||||||    
T  21859803 ttcttgtagtg 21859813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 1115370 - 1115277
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtaca 260  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||    
T  1115370 attcgccatggcgagtttaagttccttcactagtgggtttgtgccacgtcatctgtgaggagtctaggccgccctaactcgcctcgcgagtaca 1115277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 44242201 - 44242293
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||| |||||||||||||||||| |||||||    
T  44242201 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatcagtgagaagcttaaaccgccctaactcgcctcacgagtac 44242293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 45023380 - 45023507
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  45023380 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaaatcattc 45023479  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  45023480 gccatggcgagtgggctcgccttccact 45023507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 4600373 - 4600465
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||  || ||| ||||||||||||||||||||||||||    
T  4600373 attcgccatggcgagttgaagttccttcatcattgggtttgtgccatgtcatcagtgagaagcttaaaccgccctaactcgcctcgcgagtac 4600465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 32798583 - 32798660
Alignment:
Q  184 tgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtaca 260  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
T  32798583 tgaagttccttcacgattgggtttgtgccacgtcatctgtgaggagtttaggccgccctaactcgcctcgcgagtaca 32798660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 35085846 - 35085938
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||  || ||| ||| ||||||||||||||||||||||    
T  35085846 attcgccatggcgagttggagttccttcaccattgagtttgtgccacgtcatcagtgagaagcttaaaccaccctaactcgcctcgcgagtac 35085938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 43687476 - 43687568
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||  || ||| ||||||||||||||||||||||||||    
T  43687476 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcagtgagaagcttaaaccgccctaactcgcctcgcgagtac 43687568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 1390462 - 1390392
Alignment:
Q  98 tgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 168  Q
    |||| ||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1390462 tgcattttgaggcagttataagttaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtga 1390392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 9869941 - 9870054
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||| | || | | |||| || ||||||||||||||||| |||||||||  | ||    
T  9869941 attcgccatggcgagttgaagtttcttcaccattggttttgtgccacgtaacctctaaggagtctaaaccgccctaactcgccttgcgagtacattcatt 9870040  T
Q  267 cgccatggtgagtt 280  Q
    |||||||| |||||    
T  9870041 cgccatggcgagtt 9870054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 31073185 - 31073351
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    ||||||||||||||||||| ||| ||||||||||  ||||| ||||||||| |  ||| ||| |||| |||||||||||||||||||||||| |  |  |    
T  31073185 attcgccatggcgagttgatgtttcttcaccattaagtttgagccacgtcacccttgaggagtttaggccgccctaactcgcctcgcgagtaaattcact 31073284  T
Q  267 cgccatggtgagtttgctcgcctttcactagcc-tcgcgagcggagggcgagtgaaaaactgatgctctctg 337  Q
    |||||| |     |||||| ||||||||| ||| | |||||   ||||||||||||||||||||||||||||    
T  31073285 cgccattg-----ttgctcacctttcactcgccattgcgagttaagggcgagtgaaaaactgatgctctctg 31073351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 42092753 - 42092875
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  42092753 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 42092852  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  42092853 gccatggcgagtaagctcgcctt 42092875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 45016638 - 45016760
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  45016638 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 45016737  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  45016738 gccatggcgagtaagctcgcctt 45016760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 22916409 - 22916284
Alignment:
Q  42 ttaaccaaaaaacctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgt 141  Q
    ||||| ||||||||||||||||||  |   ||||| ||||| ||| ||| ||||||||||||||||| |||||  |||||| ||||||| ||||| ||||    
T  22916409 ttaacaaaaaaacctgcgacggttgccaagaacagtcgcaacaaccgtttcaaaaatgcactttgagacagttataaggtaggggtcgctgatgaggtgt 22916310  T
Q  142 cgcaatttgcagtttttcttgtagtg 167  Q
    ||||| |||  | |||||||||||||    
T  22916309 cgcaaattgatgattttcttgtagtg 22916284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 39052683 - 39052633
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  39052683 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 39052633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 39059055 - 39059005
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  39059055 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 39059005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 23252190 - 23252281
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||| ||||||||||||||| ||||||||||   |||| ||||||||| || | | ||| |||| ||||||||||||||||||||||||    
T  23252190 attcgccttggcgagttgaagtttcttcaccattaattttgagccacgtcacctctaaggagtttaggccgccctaactcgcctcgcgagta 23252281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 6239501 - 6239551
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  6239501 attcgccaaggcgagttgaagtttcttccccattgggtttgtgccacgtca 6239551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 11912649 - 11912558
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||| ||||||||||||||| ||||||||||   |||| ||||||||| || ||| ||| |||| || |||||||||||||| ||||||    
T  11912649 attcgccttggcgagttgaagtttcttcaccattaaatttgagccacgtcacctctgaggagtttaggccaccctaactcgcctcacgagta 11912558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 44917236 - 44917322
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcg 254  Q
    |||| |||||||||||||| ||| |||||||| |||| ||||||||| ||| || | | |||||   |||||||||||| |||||||    
T  44917236 attctccatggcgagttgaggttacttcaccagtgggattgtgccacatcacctctaaggagtttagccgccctaactcacctcgcg 44917322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 9316800 - 9316857
Alignment:
Q  201 tgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||| |||||||||| || |||||  |||| ||||| ||||||||||||||||||    
T  9316800 tgggtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagta 9316857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 71283 - 71448
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||     
T  71283 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttagatcgcgctaactcgcctcgcgagtacatccattt 71382  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    |||||||||||| |||||||||| |||| |||  |||||  |||||| | |||||||||| |||||    
T  71383 gccatggtgagtatgctcgccttccactcgccatgcgagttgagggcaaatgaaaaactggtgctc 71448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 50547 - 50669
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  50547 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 50646  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  50647 gccatggcgagtaagctcgcctt 50669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 19090640 - 19090805
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||  ||    
T  19090640 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttagactgccctaactcgcctcgcaagtacatccactc 19090739  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  19090740 gccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 19090805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 15949993 - 15950120
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| || | |||    
T  15949993 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacatcatctatgaagagttaaaccgccctaactcgcctcgcgagtagacacattc 15950092  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||| ||| ||||||||||    
T  15950093 gccatggcgagttcgcttgcctttcact 15950120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 26602831 - 26602958
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || || | |||    
T  26602831 attcgccatggtgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctaactcccctcgcgaatagacacattc 26602930  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||| ||||||||| ||||    
T  26602931 gccatggcgagttcgctcgccttccact 26602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 15915472 - 15915562
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  15915472 attcgccatggcgagttgaggttccttcaccattgggtttgtgccatgtcatctgtgaagagttaaaccgccctaactcgcctcgcgagta 15915562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 57 - 167
Target Start/End: Complemental strand, 48629535 - 48629425
Alignment:
Q  57 gcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcagttt 156  Q
    ||||||||||| |  ||||||||||| ||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||  ||||||||    
T  48629535 gcgacggttcatcaaaacagccgcaacaactgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagttt 48629436  T
Q  157 ttcttgtagtg 167  Q
    |||||||||||    
T  48629435 ttcttgtagtg 48629425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 33850017 - 33849924
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtaca 260  Q
    |||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  33850017 attctccatggcgagtttaagttccttcaccagtgggtttgtgccacgtcatttgtgaggagtctaggccgccctaactcgcctcgcgagtaca 33849924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 14288565 - 14288692
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  14288565 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 14288664  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||| |||||||| ||||    
T  14288665 gccatggcgagttttctcgccttccact 14288692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 14299750 - 14299877
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  14299750 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 14299849  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||| |||||||| ||||    
T  14299850 gccatggcgagttttctcgccttccact 14299877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 23613233 - 23613360
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||| ||||| ||||||||||||||    ||  ||    
T  23613233 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaacctccctagctcgcctcgcgagtcattccactc 23613332  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||||||||||||| ||||    
T  23613333 gccatggcgagtttgctcgccttccact 23613360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 6020229 - 6020140
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||  |||||   | || ||||||||||||||||||||||||    
T  6020229 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagatgtgagaggctaaaccgccctaactcgcctcgcgagt 6020140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 168 - 280
Target Start/End: Complemental strand, 22853592 - 22853480
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||  ||  ||  ||||||||||||||||||||||||||  |  |    
T  22853592 attcgccagggcgagt-gaagttccttcaccattgggtttgtgccacgtcagctgtgagaagcctaagccgccctaactcgcctcgcgagtacattccct 22853494  T
Q  267 cgccatggtgagtt 280  Q
    ||||||||||||||    
T  22853493 cgccatggtgagtt 22853480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 256
Target Start/End: Original strand, 21643363 - 21643451
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgag 256  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||| |||||||||||||    
T  21643363 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctagctcgcctcgcgag 21643451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 3923472 - 3923345
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||| | |||||||| |||||||||||||||||||||| | ||||   | || || || || |||||||||||||||| || | |||    
T  3923472 attcgccatggcgagttaaggttccttcgccattgggtttgtgccacgtcagcggtgagaggctaaactgctcttactcgcctcgcgagtagacacattc 3923373  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||||| ||||||| ||||    
T  3923372 gccatggcgagtttgttcgccttccact 3923345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 9642292 - 9642165
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||| ||||| |  | |||    
T  9642292 attcgccagggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgtgagtaaaatcattc 9642193  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||  ||||  ||||||||| ||||    
T  9642192 gccatgacgagtgggctcgccttccact 9642165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 254
Target Start/End: Original strand, 36876400 - 36876486
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcg 254  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||| |||||||||||    
T  36876400 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagcggctaaaccgccctagctcgcctcgcg 36876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 8184768 - 8184680
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || |||||||| |||||||||||||||    
T  8184768 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccct-actcgcctcgcgagt 8184680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 8192328 - 8192240
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || |||||||| |||||||||||||||    
T  8192328 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccct-actcgcctcgcgagt 8192240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 2447505 - 2447636
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  2447505 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 2447604  T
Q  268 gccatggtgagtttgctcgcctttcactagcc 299  Q
    ||||||| ||||  |||||||||  |||||||    
T  2447605 gccatggcgagtaagctcgccttctactagcc 2447636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 1379804 - 1379926
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  1379804 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 1379903  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  1379904 gccatggcgagtaagctcgcctt 1379926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 5049277 - 5049155
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  5049277 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 5049178  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  5049177 gccatggcgagtaagctcgcctt 5049155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 6796295 - 6796417
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  6796295 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 6796394  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  6796395 gccatggcgagtaagctcgcctt 6796417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 37026562 - 37026654
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtaca 260  Q
    |||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||  ||  ||  ||||||||||||||||||||||||||    
T  37026562 attcgccagggcgagt-gcagttccttcaccattgggtttgtgccacgtcagctgtgagaagcctaagccgccctaactcgcctcgcgagtaca 37026654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 290
Target Start/End: Complemental strand, 8141823 - 8141703
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttcgc 269  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||||    
T  8141823 tcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattcgc 8141724  T
Q  270 catggtgagtttgctcgcctt 290  Q
    ||||| ||||  |||||||||    
T  8141723 catggcgagtaagctcgcctt 8141703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 48346459 - 48346409
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  48346459 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 48346409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 48352843 - 48352793
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  48352843 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 48352793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 39433743 - 39433835
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtaca 260  Q
    |||||||| |||||||  |||||||||||||||| |||||||||||||||| ||||||  ||  ||  ||||||||||||||||||||||||||    
T  39433743 attcgccaaggcgagta-aagttccttcaccattaggtttgtgccacgtcagctgtgagaagcctaagccgccctaactcgcctcgcgagtaca 39433835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 1948021 - 1947980
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgt 209  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  1948021 attcgccatggcgagttgaggttccttcaccattgggtttgt 1947980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 29414044 - 29413917
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||    
T  29414044 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctcactcgcctcgcgagtagacacgttc 29413945  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||||||||||||| ||||    
T  29413944 gccatggcgagtttgctcgccttccact 29413917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 170 - 333
Target Start/End: Original strand, 42151666 - 42151829
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttcgc 269  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| || ||| |    
T  42151666 tcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctcactcgcctcgcgagtacatccattcac 42151765  T
Q  270 catggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  42151766 catggcgagtatgctcgccttccacttgccatgcgagttgagggcgaatgaaaaactggtgctc 42151829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 5877063 - 5877190
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| || | |||    
T  5877063 attcgccatggcgagttgaggttccttcaccattgggtttgtgccatgtcatctgtgaagagttaaaccgccctaactcgcctcgcgagtagacacattc 5877162  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||| ||||||||| ||||    
T  5877163 gccatggcgagttcgctcgccttccact 5877190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 22314674 - 22314801
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | ||     
T  22314674 attcgccatggcgagttgaggttccttcaccattgggtttgtgccaagtcatctgtgaagagttaaaccgccctaactcgcctcgcgagtacacacattt 22314773  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||  |||||||| ||||    
T  22314774 gccatggcgagttctctcgccttccact 22314801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 22360808 - 22360935
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| || | |||    
T  22360808 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatatgtgaagagttaaaccgccctaactcgcctcgcgagtagacacattc 22360907  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||  |||||||| ||||    
T  22360908 gccatggcgagttctctcgccttccact 22360935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 4974411 - 4974521
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||  || ||| ||||||||||||||||||||||||||   | ||    
T  4974411 attcgccatggcaagttgaagttcctttaccattgggtttgtgccacgtcatcagtgagaagcttaaaccgccctaactcgcctcgcgagtactttcctt 4974510  T
Q  267 cgccatggtga 277  Q
    |||||||||||    
T  4974511 cgccatggtga 4974521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 25894024 - 25893897
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  25894024 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 25893925  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||| |||||||| ||||    
T  25893924 gccatggcgagttttctcgccttccact 25893897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 40957992 - 40957865
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||| ||||||||||||||    ||  ||    
T  40957992 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctagctcgcctcgcgagtcattccactc 40957893  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||||||||||||| ||||    
T  40957892 gccatggcgagtttgctcgccttccact 40957865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 34356630 - 34356580
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34356630 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 34356580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 34358421 - 34358371
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  34358421 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 34358371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 30579594 - 30579505
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||||||||||||| ||| |||||||| ||||||| |||||||||| || ||| ||| || | ||||| ||||||||||||||||||    
T  30579594 tcgccatggcgagttgatgtttcttcaccagtgggtttctgccacgtcagctctgaggagttttggccgccttaactcgcctcgcgagta 30579505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 2958717 - 2958767
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  2958717 attcgccaaggcgagttgaagtttcttccccattgggtttgtgccacgtca 2958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 2967186 - 2967236
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  2967186 attcgccaaggcgagttgaagtttcttccccattgggtttgtgccacgtca 2967236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 29974816 - 29974866
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  29974816 attcgccaaggcgagttgaagtttcttccccattgggtttgtgccacgtca 29974866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 29981319 - 29981369
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  29981319 attcgccaaggcgagttgaagtttcttccccattgggtttgtgccacgtca 29981369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 30021826 - 30021776
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||| |||||||||||||| |||| ||||||||||||||||||||||    
T  30021826 attcgccaaggcgagttgaagtttcttccccattgggtttgtgccacgtca 30021776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 2439631 - 2439722
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||||||| ||||||| ||| ||||||||||  ||||| ||||||||| || ||| ||| ||||  |||||||||| ||||||||||||    
T  2439631 attcgccatggtgagttgatgtttcttcaccattaagtttgagccacgtcacctctgaggagtttagggcgccctaacttgcctcgcgagta 2439722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 12505154 - 12505064
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagtt-agaccgccctaactcgcctcgcgagta 258  Q
    |||||| ||||||||| || ||| |||||||| |||||||| ||||| ||| || ||| ||||| || ||||||||||||||||||||||||    
T  12505154 attcgcaatggcgagt-gaggttacttcaccagtgggtttgagccacatcacctttgaggagtttaggccgccctaactcgcctcgcgagta 12505064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 168 - 333
Target Start/End: Complemental strand, 8267 - 8102
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| || |||    
T  8267 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacatcatctgtgaagagttaaaccgccctaactcccctcgcgagtacatccattc 8168  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
     |||||| |||| |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  8167 tccatggcgagtatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 8102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 1869 - 2034
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtga-agagttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| | |||  || |||||| |||||||||||||||||| |  | ||    
T  1869 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgttagaga-ctaaaccgccttaactcgcctcgcgagtaaattcatt 1967  T
Q  267 cgccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    |||||||| ||||  ||||||||| |||| |||  |||||  |||||||| || ||||||| |||||    
T  1968 cgccatggcgagtaagctcgccttccactcgccatgcgagttgagggcgaatgtaaaactggtgctc 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 27438048 - 27437912
Alignment:
Q  35 taattaattaaccaaaaaa-cctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcaga 133  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  27438048 taattaattaaacaaaaaaacctgcgacggttcaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgcaaggtaaggatcgcaga 27437949  T
Q  134 tgaagtgtcgcaatttgca--gtttttcttgtagtga 168  Q
    |||||||||||||||||||  ||||||||||||||||    
T  27437948 tgaagtgtcgcaatttgcagtgtttttcttgtagtga 27437912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 333
Target Start/End: Original strand, 32747214 - 32747379
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  32747214 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaattcattc 32747313  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||| ||||  ||||||||| |||| |||  |||||  |||||||| ||| |||||| |||||    
T  32747314 gccatggagagtaagctcgccttccactcgccatgcgagttgagggcgaatgataaactggtgctc 32747379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 24179918 - 24180049
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  24179918 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 24180017  T
Q  268 gccatggtgagtttgctcgcctttcactagcc 299  Q
    ||||||| ||||||||||||||| ||||||||    
T  24180018 gccatggcgagtttgctcgccttccactagcc 24180049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 25894072 - 25894199
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||  ||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  25894072 attcgccatggcgagttgaggttccttcttcattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaaagcattc 25894171  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  25894172 gccatggcgagtgggctcgccttccact 25894199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 72 - 169
Target Start/End: Complemental strand, 9775223 - 9775127
Alignment:
Q  72 aacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgat 169  Q
    ||||||||||| |||  ||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  9775223 aacagccgcaacaactattgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcag-ttttcttgtagtgat 9775127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 6037125 - 6037215
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtga-agagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||  | | || ||||||||| ||||||||||||||    
T  6037125 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagggggctaaaccgccctagctcgcctcgcgagt 6037215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 43995910 - 43995999
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    |||| |||||||||||| ||| |||||||| |||||||| ||||||||| || ||| ||| |||||||||||||||||||||||||||||    
T  43995910 tcgcaatggcgagttgaggttacttcaccagtgggtttgagccacgtcacctttgaggagtttagaccgccctaactcgcctcgcgagta 43995999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 176 - 259
Target Start/End: Complemental strand, 4310837 - 4310753
Alignment:
Q  176 tggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||| |||| |||||||||||||||||||||| | ||||  || ||| ||||||||||||||||||||||||||    
T  4310837 tggcgagttgaagtttcttccccattgggtttgtgccacgtcagcagtgagaagcttaaaccgccctaactcgcctcgcgagtac 4310753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 337
Target Start/End: Complemental strand, 10940691 - 10940521
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    ||||||||||||||||||| ||| ||||||||||  ||||| ||||||||  || ||| ||| |||| ||||||||||||||||| ||| || |  |  |    
T  10940691 attcgccatggcgagttgatgtttcttcaccattaagtttgagccacgtcgcctttgaggagtttaggccgccctaactcgcctcacgattaaattcact 10940592  T
Q  267 cgccatggtgagtttgctcgcctttcactagcc-tcgcgagcggagggcgagtgaaaaactgatgctctctg 337  Q
    |||||| | ||| |||||||||||||||| ||| | | |||  ||||||| |||||||||||||||||||||    
T  10940591 cgccattgcgag-ttgctcgcctttcactcgccgttgtgagttgagggcgtgtgaaaaactgatgctctctg 10940521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 27501332 - 27501210
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  27501332 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 27501233  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  27501232 gccatggcgagtaagctcgcctt 27501210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 2786554 - 2786645
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttaga-ccgccctaactcgcctcgcgagta 258  Q
    ||||||||||||||||||| ||| |||||||| ||||||| |||||||||| || ||| |||||  | ||||||||||||||||||| ||||    
T  2786554 attcgccatggcgagttgatgtttcttcaccagtgggtttctgccacgtcagctttgaggagttttagccgccctaactcgcctcgcaagta 2786645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 295
Target Start/End: Complemental strand, 9569897 - 9569770
Alignment:
Q  169 ttcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatc-tgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| | | |||   | || |||||| | |||||||||||||||  | ||  ||    
T  9569897 ttcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttgagaggctaaaccgccttcactcgcctcgcgagtcaatccactc 9569798  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||||||||  ||||||||| ||||    
T  9569797 gccatggtgagtaagctcgccttccact 9569770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 23069334 - 23069426
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||| |||| ||||||||||||  ||| |||| |  |||  || ||| ||||||||||||||||||||||||||    
T  23069334 attcgccatggcgagttgaagtttcttccccattgggtttgaaccatgtcagcaatgagaagcttaaaccgccctaactcgcctcgcgagtac 23069426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 43932409 - 43932500
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||||||||||||||| ||| ||||||||||  ||||| ||||||||| || | | ||| |||| ||||||||||||||||| ||||||    
T  43932409 attcgccatggcgagttgatgtttcttcaccattaagtttgagccacgtcacctctaaggagtttaggccgccctaactcgcctcacgagta 43932500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 337
Target Start/End: Original strand, 47441670 - 47441840
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaag-agttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    |||||| |||||||||||| ||| |||||||| |||||||| |||||||||||| ||| | | ||||  ||||||||||||||| | ||||| |  |  |    
T  47441670 attcgcaatggcgagttgaggttacttcaccactgggtttgagccacgtcatctttgaggaatttaggtcgccctaactcgccttgtgagtaaatgcact 47441769  T
Q  267 cgccatggtgagtttgctcgcctttcactagcc-tcgcgagcggagggcgagtgaaaaactgatgctctctg 337  Q
    |||||| | ||| ||||||||||| || | ||| | | |||  ||||||| |||||||||||||||||||||    
T  47441770 cgccattgcgag-ttgctcgccttccattcgcctttgggagttgagggcgtgtgaaaaactgatgctctctg 47441840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 9576396 - 9576350
Alignment:
Q  172 gccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||    
T  9576396 gccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 9576350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 20650447 - 20650357
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag--ttagaccgccctaactcgcctcgcgagt 257  Q
    |||||||||| |||||||| ||| |||||| | |||||||||| ||||||| || ||| |||  |||| |||||||||||||||||||||||    
T  20650447 attcgccatgccgagttgaggttacttcactagtgggtttgtgacacgtcacctctgaggagatttag-ccgccctaactcgcctcgcgagt 20650357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 460842 - 460794
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||||||||||||  || |||| ||||||||||| ||||||||||    
T  460842 tcgccatggcgagttgaccttgcttcgccattgggtttttgccacgtca 460794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 35 - 158
Target Start/End: Complemental strand, 4103350 - 4103226
Alignment:
Q  35 taattaattaaccaaaaaa-cctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcaga 133  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||    
T  4103350 taattaattaaccaaaaaaacctgcgacggtttaccctaacagccgcaacaactgttgcaaaaatgcactttgaggcagttgtaaggtaagggtcgcaga 4103251  T
Q  134 tgaagtgtcgcaatttgcagttttt 158  Q
    |||||||||||||||||||||||||    
T  4103250 tgaagtgtcgcaatttgcagttttt 4103226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 7781170 - 7781297
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| || | |||    
T  7781170 attcgccatggcgagttgaggttccttcaccattgggtttgtgccacgtcatctgtgaagagttaaaccgccctaactcgcttcacgagtagacacattc 7781269  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||| ||||||||| ||||    
T  7781270 gccatggcgagttcgctcgccttccact 7781297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 16406190 - 16406282
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  || ||| ||||||||||||||||||| ||||||    
T  16406190 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatcagtgagaagcttaaaccgccctaactcgcctcgtgagtac 16406282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 8104726 - 8104853
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  8104726 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaaatcattc 8104825  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  8104826 gccatggcgagtgggctcgccttccact 8104853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 13594953 - 13595080
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | |||    
T  13594953 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaaatcattc 13595052  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  13595053 gccatggcgagtgggctcgccttccact 13595080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 37367687 - 37367560
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  37367687 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 37367588  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||||||||||||| ||||    
T  37367587 gccatggcgagtttgctcgccttccact 37367560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 27591156 - 27591283
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  27591156 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 27591255  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||| |||||||| ||||    
T  27591256 gccatggcgagttttctcgccttccact 27591283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 55462149 - 55462022
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||| |  | ||     
T  55462149 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtaaaatcattt 55462050  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  55462049 gccatggcgagtgggctcgccttccact 55462022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 168 - 295
Target Start/End: Original strand, 30239071 - 30239198
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || || |||||| ||||||||||||||    ||  ||    
T  30239071 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaactgccctagctcgcctcgcgagtcattccactc 30239170  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||||||||||||| ||||    
T  30239171 gccatggcgagtttgctcgccttccact 30239198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 249
Target Start/End: Complemental strand, 30210923 - 30210841
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcc 249  Q
    ||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||| |||| ||| |||||||||||||||    
T  30210923 attcgccatggcgagtttaagttccttcaccagtaggtttgtgccacgtcatctgtgaggagtctaggccgccctaactcgcc 30210841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 17457701 - 17457789
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || |||||||| |||||||||||||||    
T  17457701 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccct-actcgcctcgcgagt 17457789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 37355712 - 37355620
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||| |||| |||||||||||| |||| |||| |  |||  || ||| ||||||||||||||||||||||||||    
T  37355712 attcgccatggcgagttgaagtttcttccccattgggtttgcgccatgtcagcaatgagaagcttaaaccgccctaactcgcctcgcgagtac 37355620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 41373843 - 41373965
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||| ||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  41373843 attcgccgtggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 41373942  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  41373943 gccatggcgagtaagctcgcctt 41373965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 36754182 - 36754098
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcg 252  Q
    ||||||||||||||||||| ||| |||||||| |||||||||||||||||| || ||| |||| ||| |||| |||||||||||||    
T  36754182 attcgccatggcgagttgaggttacttcaccagtgggtttgtgccacgtcacctctgaggagtatag-ccgctctaactcgcctcg 36754098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 54300951 - 54300894
Alignment:
Q  201 tgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||| |||||||||| || |||||  |||| ||||| ||||||||||||||||||    
T  54300951 tgggtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagta 54300894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 15327981 - 15327849
Alignment:
Q  35 taattaattaaccaaaaaac-ctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcaga 133  Q
    |||||||||||||||||||  |||||||||||||   |||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  15327981 taattaattaaccaaaaaaatctgcgacggttcatgctaacagccgcaacaat-gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcaga 15327883  T
Q  134 tgaagtgtcgcaatttgcagtttttcttgtagtg 167  Q
    ||||||||| ||||||||||||||||||||||||    
T  15327882 tgaagtgtcacaatttgcagtttttcttgtagtg 15327849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 35 - 167
Target Start/End: Complemental strand, 15508350 - 15508218
Alignment:
Q  35 taattaattaaccaaaaaac-ctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcaga 133  Q
    |||||||||||||||||||  |||||||||||||   |||||||||||| ||  ||||||||||||||||||||||||||||||| ||||||||||||||    
T  15508350 taattaattaaccaaaaaaatctgcgacggttcatgctaacagccgcaacaat-gttgcaaaaatgcactttgaggcagttgcaaagtaagggtcgcaga 15508252  T
Q  134 tgaagtgtcgcaatttgcagtttttcttgtagtg 167  Q
    ||||||||| ||||||||||||||||||||||||    
T  15508251 tgaagtgtcacaatttgcagtttttcttgtagtg 15508218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 1239058 - 1239150
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |||||| |||||||||||||||||||    
T  1239058 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatcagtgaaaagcttaaaccgccttaactcgcctcgcgagtac 1239150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 15013235 - 15013328
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtaca 260  Q
    ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  15013235 attcgccatggcgagtttaaattccttcaccagtgggtttgtgccacgtcatctgtgaggagtctagaccgccctaactcgcctcgcaagtaca 15013328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 12769743 - 12769835
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtga-agagttagaccgccctaactcgcctcgcgagtac 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   || ||| ||||||||||||||||||||||    
T  12769743 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgagaggcctaaaccaccctaactcgcctcgcgagtac 12769835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 36425106 - 36424979
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  36425106 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 36425007  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| |||||| |||||||| ||||    
T  36425006 gccatggcgagttttctcgccttccact 36424979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 16710047 - 16709955
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  |||  || ||| ||||||||||||||||||||||||||    
T  16710047 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcaatgagaagcttaaaccgccctaactcgcctcgcgagtac 16709955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 168 - 250
Target Start/End: Complemental strand, 11357549 - 11357467
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcct 250  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || |||||||||||||||||    
T  11357549 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcct 11357467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 6463941 - 6463819
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  6463941 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 6463842  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  6463841 gccatggcgagtaagctcgcctt 6463819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 7312204 - 7312326
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  7312204 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 7312303  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  7312304 gccatggcgagtaagctcgcctt 7312326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 36004849 - 36004727
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  36004849 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 36004750  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  36004749 gccatggcgagtaagctcgcctt 36004727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 15013432 - 15013492
Alignment:
Q  201 tgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtaca 260  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||    
T  15013432 tgggtttgtgccacgtcatctgtgaggagtctagaccgccctaactcgcctcgcaagtaca 15013492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 290
Target Start/End: Complemental strand, 8012681 - 8012563
Alignment:
Q  172 gccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttcgcca 271  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||||||    
T  8012681 gccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattcgcca 8012582  T
Q  272 tggtgagtttgctcgcctt 290  Q
    ||| ||||  |||||||||    
T  8012581 tggcgagtaagctcgcctt 8012563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 257
Target Start/End: Complemental strand, 36021109 - 36021024
Alignment:
Q  172 gccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaaga-gttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||| | || |||||| | |||||||||||||||    
T  36021109 gccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgt-aagaggctaaaccgccttcactcgcctcgcgagt 36021024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 168 - 258
Target Start/End: Complemental strand, 45067802 - 45067711
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||||||||||||||| ||| ||||||||||  ||||| ||||||||| |  |||  || |||| ||||||||||||||||||||||||    
T  45067802 attcgccatggcgagttgatgtttcttcaccattaagtttgagccacgtcacccttgagaagtttaggccgccctaactcgcctcgcgagta 45067711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 36076822 - 36076944
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    |||| |||||||||||||||||| ||||  ||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  36076822 attcaccatggcgagttgaagtttcttcctcattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 36076921  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  36076922 gccatggcgagtaagctcgcctt 36076944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0513 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0513
Description:

Target: scaffold0513; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 168 - 333
Target Start/End: Complemental strand, 11521 - 11356
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||  |||||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||| |||| ||||||||| || |||    
T  11521 attcgccatggcgagttgtggttccttcaccagtgggtttatgccacgtcatatgtgaagagttaaaccgccctaacttgccttgcgagtacatccattc 11422  T
Q  268 gccatggtgagtttgctcgcctttcactagcctcgcgagcggagggcgagtgaaaaactgatgctc 333  Q
    ||||||| || | |||||||||| |||| |||  |||||  |||||||| |||||||||| |||||    
T  11421 gccatggcgactatgctcgccttccactcgccatgcgagttgagggcgaatgaaaaactggtgctc 11356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 16004 - 16097
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagt-tagaccgccctaactcgcctcgcgagtaca 260  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||    
T  16004 attcgccatggcgagttgaagttccttcaccagtgggtttgtgccacgtcatctgtaaggagtctaggccgccctaactcgcctcgcgagtaca 16097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 2725 - 2824
Alignment:
Q  72 aacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtgattc 171  Q
    ||||||||||| ||| |||||||||||||| |||||||| |||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  2725 aacagccgcaacaactgttgcaaaaatgcattttgaggcggttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtgattc 2824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 4737756 - 4737625
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    ||  ||    
T  4737756 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagtcattccactc 4737657  T
Q  268 gccatggtgagtttgctcgcctttcactagcc 299  Q
    ||||||| ||||||||||||||| ||||||||    
T  4737656 gccatggcgagtttgctcgccttccactagcc 4737625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 72 - 167
Target Start/End: Complemental strand, 14958997 - 14958902
Alignment:
Q  72 aacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcagtttttcttgtagtg 167  Q
    ||||||||||| ||| |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||  |||||||||||||||||||    
T  14958997 aacagccgcaacaaccgttgcaaaaatgcattttgaggcagttgtaagttaagggtcgcagatgaagtgtcgcaaaatgcagtttttcttgtagtg 14958902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 4668773 - 4668642
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||| ||||||    ||  ||    
T  4668773 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgccttgcgagtcattccactc 4668674  T
Q  268 gccatggtgagtttgctcgcctttcactagcc 299  Q
    ||||||| ||||||||||||||| ||||||||    
T  4668673 gccatggcgagtttgctcgccttccactagcc 4668642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 54 - 170
Target Start/End: Complemental strand, 8877938 - 8877823
Alignment:
Q  54 cctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaatttgcag 153  Q
    |||||||| ||||||   ||||||||||| ||| |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||| |      
T  8877938 cctgcgacagttcactcaaacagccgcaacaactgttgcaaaaatgca-tttgaggcagttgcaaggcatgggtcgcagatgaagtgtcgcaatttcctt 8877840  T
Q  154 tttttcttgtagtgatt 170  Q
     ||||||||||||||||    
T  8877839 attttcttgtagtgatt 8877823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 13671191 - 13671099
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||  || ||| ||||||||||||||||||||||||||    
T  13671191 attcgtcatggcgagttgaagttccttcaccattgggtttgtgccacgtcatcactgagaagcttaaaccgccctaactcgcctcgcgagtac 13671099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 4187542 - 4187631
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    
T  4187542 attcaccatggcgagttgaagttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagt 4187631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 168 - 257
Target Start/End: Original strand, 31548752 - 31548841
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||||||||||    
T  31548752 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgcctcgcgagt 31548841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 9864138 - 9864046
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| | ||||  || ||| ||||||||||||||||||||||||||    
T  9864138 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcagtgagaagcttaaaccgccctaactcgcctcgcgagtac 9864046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 21261949 - 21261857
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtac 259  Q
    ||||||||||||||  |||||||||||||||||||||||| |||||||||||| ||||  || ||| ||||||||||||||||||||||||||    
T  21261949 attcgccatggcgaaatgaagttccttcaccattgggtttatgccacgtcatcagtgagaagtttaaaccgccctaactcgcctcgcgagtac 21261857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 7061880 - 7061753
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||   | || |||||| | ||||||||||||||| |  ||  ||    
T  7061880 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagctgtgagaggctaaaccgccttcactcgcctcgcgagtccttccactc 7061781  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  7061780 gccatggcgagtaagctcgccttccact 7061753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 295
Target Start/End: Complemental strand, 7069066 - 7068939
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||   | || |||||| | ||||||||||||||| |  ||  ||    
T  7069066 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagctgtgagaggctaaaccgccttcactcgcctcgcgagtccttccactc 7068967  T
Q  268 gccatggtgagtttgctcgcctttcact 295  Q
    ||||||| ||||  ||||||||| ||||    
T  7068966 gccatggcgagtaagctcgccttccact 7068939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 34710934 - 34710845
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || |||||| | |||||||||||||||    
T  34710934 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccttcactcgcctcgcgagt 34710845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 278
Target Start/End: Original strand, 27670887 - 27670997
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| | ||||  ||  ||  ||||||||||||||||||||||||||  |  |    
T  27670887 attcgccagggcgagt-gaagttccttcaccattgggtttgtgccacgtcagccgtgagaagcctaagccgccctaactcgcctcgcgagtacattccct 27670985  T
Q  267 cgccatggtgag 278  Q
    ||||||||||||    
T  27670986 cgccatggtgag 27670997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 1427788 - 1427666
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  1427788 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 1427689  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  1427688 gccatggcgagtaagctcgcctt 1427666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 4019600 - 4019478
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  4019600 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 4019501  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  4019500 gccatggcgagtaagctcgcctt 4019478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 4026026 - 4025904
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  4026026 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 4025927  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  4025926 gccatggcgagtaagctcgcctt 4025904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 4717905 - 4717783
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  4717905 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 4717806  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  4717805 gccatggcgagtaagctcgcctt 4717783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 257
Target Start/End: Complemental strand, 32327858 - 32327769
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaaga-gttagaccgccctaactcgcctcgcgagt 257  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||| |||| | || |||||| | |||||||||||||||    
T  32327858 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgt-aagaggctaaaccgccttcactcgcctcgcgagt 32327769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 34649657 - 34649779
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||| ||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  34649657 attcgccatggtgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 34649756  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  34649757 gccatggcgagtaagctcgcctt 34649779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 34656108 - 34656230
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||  |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  34656108 attcgccatggcgagttgaagtttctttcccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 34656207  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  34656208 gccatggcgagtaagctcgcctt 34656230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 31128663 - 31128614
Alignment:
Q  169 ttcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtca 218  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  31128663 ttcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtca 31128614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 33596407 - 33596524
Alignment:
Q  50 aaaacctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaattt 149  Q
    ||||| |||||| ||| |||  |||||  |||| ||| ||||||||  | || ||||||||||||  |||||| ||||||||||||||||||| ||||||    
T  33596407 aaaacttgcgacagttgacccaaacagttgcaacaaccgttgcaaatgttcattttgaggcagttataaggtaggggtcgcagatgaagtgtcacaattt 33596506  T
Q  150 gcagtttttcttgtagtg 167  Q
    || | |||||||||||||    
T  33596507 gctgattttcttgtagtg 33596524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 258
Target Start/End: Complemental strand, 1166858 - 1166775
Alignment:
Q  176 tggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttaga-ccgccctaactcgcctcgcgagta 258  Q
    ||||||||||| ||| |||||||| |||||||||| ||||||| || ||| |||||  | ||||||||||||||||||||||||    
T  1166858 tggcgagttgaggtttcttcaccagtgggtttgtgacacgtcacctctgaggagttttagccgccctaactcgcctcgcgagta 1166775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 18766551 - 18766608
Alignment:
Q  201 tgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||| |||||||||| || |||||  |||| ||||| ||||||||||||||||||    
T  18766551 tgggtttctgccacgtcagctttgaaggattaggccgccttaactcgcctcgcgagta 18766608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 299
Target Start/End: Original strand, 8638 - 8769
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||   | || ||||||||||||||||| ||||||    ||  ||    
T  8638 attcgccatggcgagttgaggttccttcgccattgggtttgtgccacgtcagctgtgagaggctaaaccgccctaactcgccttgcgagtcattccactc 8737  T
Q  268 gccatggtgagtttgctcgcctttcactagcc 299  Q
    ||||||| ||||||||||||||| ||||||||    
T  8738 gccatggcgagtttgctcgccttccactagcc 8769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 168 - 280
Target Start/End: Original strand, 3509 - 3621
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagtacacccgtt 266  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||  ||  ||  |||||||||||||||||||| |||||  |  |    
T  3509 attcgccagggcgagt-gaagttccttcaccattgggtttgtgccacgtcagctgtgagaagcctaagccgccctaactcgcctcgcgggtacattccct 3607  T
Q  267 cgccatggtgagtt 280  Q
    ||||||||||||||    
T  3608 cgccatggtgagtt 3621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 4370 - 4248
Alignment:
Q  168 attcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagtacacccgttc 267  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||||| |  | |   | || |||||||| ||||||||||||||| |  || |||    
T  4370 attcgccatggcgagttgaagtttcttccccattgggtttgtgccacgtcagcatttagaggctaaaccgcccttactcgcctcgcgagtccttccattc 4271  T
Q  268 gccatggtgagtttgctcgcctt 290  Q
    ||||||| ||||  |||||||||    
T  4270 gccatggcgagtaagctcgcctt 4248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 111119 - 111003
Alignment:
Q  48 aaaaaacctgcgacggttcaccgtaacagccgcaataacagttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgcaat 147  Q
    ||||||| |||||| ||||||  |||| | ||||| ||| ||||| || |||||| |||||||||||  |||||||||||||||  || ||||||||||     
T  111119 aaaaaacttgcgactgttcactataactgtcgcaacaactgttgcgaatatgcacattgaggcagttataaggtaagggtcgcaattgcagtgtcgcaaa 111020  T
Q  148 ttgcagtttttcttgta 164  Q
     ||| | ||||||||||    
T  111019 atgctgattttcttgta 111003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 10353 - 10296
Alignment:
Q  88 gttgcaaaaatgcactttgaggcagttgcaaggtaagggtcgcagatgaagtgtcgca 145  Q
    ||||||||  ||||| |||||||||||  ||||||||||||||| |||||||||||||    
T  10353 gttgcaaagttgcacattgaggcagttataaggtaagggtcgcaaatgaagtgtcgca 10296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1487 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 258
Target Start/End: Complemental strand, 1478 - 1390
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagagttagaccgccctaactcgcctcgcgagta 258  Q
    |||||||||||||||||  || ||| |||| ||||||| ||||||||||  | ||| |  |||| ||||| ||||||||||||||||||    
T  1478 tcgccatggcgagttgagctttctttaccagtgggtttctgccacgtcagatttgagggattaggccgccttaactcgcctcgcgagta 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 258
Target Start/End: Original strand, 6945 - 7034
Alignment:
Q  170 tcgccatggcgagttgaagttccttcaccattgggtttgtgccacgtcatctgtgaagag-ttagaccgccctaactcgcctcgcgagta 258  Q
    ||||||||||||||||| ||| |||||||| ||| ||| | |||||||  || ||||||| || | ||||| || |||||||||||||||    
T  6945 tcgccatggcgagttgatgtttcttcaccagtggatttcttccacgtcggctatgaagagttttggccgccttagctcgcctcgcgagta 7034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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