View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0410_low_9 (Length: 340)
Name: NF0410_low_9
Description: NF0410
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0410_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 24723569 - 24723793
Alignment:
| Q |
28 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatggggttgattgagtggagggagagg |
127 |
Q |
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| T |
24723569 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatgggattgattgagtggagggagagg |
24723668 |
T |
|
| Q |
128 |
tttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc |
221 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24723669 |
tttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc |
24723768 |
T |
|
| Q |
222 |
aaatctggcaactgaaaatgtgatg |
246 |
Q |
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||||||||||||||||||||||||| |
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| T |
24723769 |
aaatctggcaactgaaaatgtgatg |
24723793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 28 - 246
Target Start/End: Original strand, 21131432 - 21131656
Alignment:
| Q |
28 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctaaaaatggggttgattgagtggagggagagg |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| |
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| T |
21131432 |
tctaatcacaatccatggggttgaaaccttatctagcattagttatatataattggtcgaaacctttctcaaaatgggcttgatagagtggagggagagg |
21131531 |
T |
|
| Q |
128 |
tttaagccttatcgtgtgt------tcatagattaattcatggtcaaaagtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatc |
221 |
Q |
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| T |
21131532 |
tttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaaattcattatctagattaatctttttcgtttcctcgtaaatttttaatgtatc |
21131631 |
T |
|
| Q |
222 |
aaatctggcaactgaaaatgtgatg |
246 |
Q |
| |
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|||||||||||||| |||||||||| |
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| T |
21131632 |
aaatctggcaactggaaatgtgatg |
21131656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 24723059 - 24723099
Alignment:
| Q |
53 |
accttatctagcattagttatatataattggtcgaaacctt |
93 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |
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| T |
24723059 |
accttatctagcattagttatatagaattggtcgaaacctt |
24723099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 49580469 - 49580630
Alignment:
| Q |
76 |
ataattggtcgaaacctttctaaaaatggggttgattgagtggagggagaggtttaagccttatcgtgtgt------tcatagattaattcatggtcaaa |
169 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49580469 |
ataattggtcaaaacctttttaaaaatggggttgattgagtggag----aggtttaagccttatcgtgtgtgaccactcatagattaattcatggtcaaa |
49580564 |
T |
|
| Q |
170 |
agtcattatctagattaatcttctttgtttcctcgtaaagctttaatgaatcaaatctggcaactg |
235 |
Q |
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| T |
49580565 |
attcattatcttgagtaatatttctgttttcctcgtaaagctttaatgaatcaaatccggcaactg |
49580630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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