View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_109 (Length: 285)
Name: NF0412_high_109
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_109 |
 | |
|
| [»] scaffold0055 (1 HSPs) |
| | |
|
| [»] scaffold0052 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 55 - 225
Target Start/End: Original strand, 14989427 - 14989597
Alignment:
| Q |
55 |
aatatctctagtgctcggaattcgaaaggcgactctacatttcatatttagatcatcaacatattaatgtgaaggcttcttattccgcaacaaagaaagt |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14989427 |
aatatctctagtgctcggaattcgaaaggcgactctacatttcatatttagatcatcaacatattaatgtgaaggcttcttattccgcaataaagaaagt |
14989526 |
T |
|
| Q |
155 |
aatttttcagtctggctcgcactcgggtttttatttggaaaataaaatgttccataccaatggatttgggt |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14989527 |
aatttttcagtctggctcgcactcgggtttttacttggaaaataaaatgttccatactaatggatttgggt |
14989597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 109
Target Start/End: Original strand, 14982852 - 14982909
Alignment:
| Q |
52 |
agaaatatctctagtgctcggaattcgaaaggcgactctacatttcatatttagatca |
109 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
14982852 |
agaaatatctctagtgctcggaattcaaaagatgactctacatttcatattaagatca |
14982909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 2916747 - 2916843
Alignment:
| Q |
124 |
tgaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactcgg-gtttttatttggaaaataaaatgttccataccaatggat |
219 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||||||||| ||||| || ||| ||||| | |||||||| ||||| ||| |||| ||||||| |
|
|
| T |
2916747 |
tgaaggcttcttattccacaacaaagaaagcactttttcagtctcgctcgtacgcggtgttttcacttggaaaagaaaatattcgatactaatggat |
2916843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 219
Target Start/End: Complemental strand, 7708476 - 7708379
Alignment:
| Q |
124 |
tgaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactcg-ggtttttatttgg-aaaataaaatgttccataccaatggat |
219 |
Q |
| |
|
|||||| |||||||||| |||||||||||| | ||||||||||| ||||| || || |||||| | |||| |||| ||||||||| |||| ||||||| |
|
|
| T |
7708476 |
tgaaggtttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcgaggttttcacttggaaaaagaaaatgttcgatactaatggat |
7708379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 1092 - 1187
Alignment:
| Q |
125 |
gaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactc-gggtttttatttggaaaataaaatgttccataccaatggat |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||||| ||||| || | ||||||| | |||||||| ||||| ||| |||| ||||||| |
|
|
| T |
1092 |
gaaggcttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcggggttttcacttggaaaagaaaatattcgatactaatggat |
1187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 83443 - 83348
Alignment:
| Q |
125 |
gaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactc-gggtttttatttggaaaataaaatgttccataccaatggat |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||||| ||||| || | ||||||| | |||||||| ||||| ||| |||| ||||||| |
|
|
| T |
83443 |
gaaggcttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcggggttttcacttggaaaagaaaatattcgatactaatggat |
83348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 18353083 - 18353178
Alignment:
| Q |
125 |
gaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactc-gggtttttatttggaaaataaaatgttccataccaatggat |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||| | ||||||||||| ||||| || | ||||||| | |||||||| ||||| ||| |||| ||||||| |
|
|
| T |
18353083 |
gaaggcttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcggggttttcacttggaaaagaaaatattcgatactaatggat |
18353178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1808 times since January 2019
Visitors: 3091