View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_112 (Length: 284)
Name: NF0412_high_112
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_112 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 28 - 268
Target Start/End: Complemental strand, 18153238 - 18152998
Alignment:
| Q |
28 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153238 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
18153139 |
T |
|
| Q |
128 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153138 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
18153039 |
T |
|
| Q |
228 |
atacatggacgttccagtggacattatgcacttgttacaca |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18153038 |
atacatggacgttccagtggacattatgcacttgttacaca |
18152998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 1785691 - 1785738
Alignment:
| Q |
221 |
tgataaaatacatggacgttccagtggacattatgcacttgttacaca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacaca |
1785738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 36 - 241
Target Start/End: Original strand, 222478 - 222683
Alignment:
| Q |
36 |
gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa |
135 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||| |||||||| ||| ||| |
|
|
| T |
222478 |
gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa |
222577 |
T |
|
| Q |
136 |
tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg |
235 |
Q |
| |
|
||||||||||||||||||| | | ||||| || |||||| ||||||| ||| | ||||| || ||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
222578 |
tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg |
222677 |
T |
|
| Q |
236 |
acgttc |
241 |
Q |
| |
|
||||| |
|
|
| T |
222678 |
gcgttc |
222683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 23937344 - 23937283
Alignment:
| Q |
207 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacaca |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacaca |
23937283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 178
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
143 |
tggaagaacagggaatctttttgaacagcctgttat |
178 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
75 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
148 |
Q |
| |
|
|||| |||| ||||||| |||||||| |||||| | || ||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1517 times since January 2019
Visitors: 3089