View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_128 (Length: 274)
Name: NF0412_high_128
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_128 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 52 - 239
Target Start/End: Original strand, 54388759 - 54388946
Alignment:
| Q |
52 |
aaaagatgtatttgtaaccaatgaaaaagtatatctaccagaagtatatactagtatatctaaacaaggtgcatgtgtataacatgttgctttcagcact |
151 |
Q |
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| T |
54388759 |
aaaagatgtatttgtaaccaatgaaaaagtatatctaccagaagtatatactagtatatctaaacaaggtgcatgtgtataacatgttgctttcagcact |
54388858 |
T |
|
| Q |
152 |
acgttctgtttacttgtgcgtgtaggaaaaacatttgacatgttagcattcttcaaacgtaagcacttcaaaactaagctaccttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54388859 |
acgttctgtttacttgtgcgtgtaggaaaaacatttgacatgttagcattcttcaaacgtaagcacttcaaaactaagctaccttcat |
54388946 |
T |
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