View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_137 (Length: 268)
Name: NF0412_high_137
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_137 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 25320976 - 25321159
Alignment:
| Q |
43 |
tatttcaccctagaccaatcatccaacgatgaattactagatgttttttggcctgaaaaacccaaagacataccatacatatgagaaataggaaggttga |
142 |
Q |
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| T |
25320976 |
tatttcaccctagaccaatcatccaacgatgaattactaaatgttttttggcctgaaaatcc-aaagacataccatacaaatgagaaataggaaggttga |
25321074 |
T |
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| Q |
143 |
attgaataattatcataaatttgaaaa--atatggtaccgttttcatgtatgtaaattggaaaatttccataattgttcttcatc |
225 |
Q |
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| T |
25321075 |
attgaataattatcataaatttgaaaaatatatggtaccgttttcatgtatgtaaattggaaactttccataattgttcttcatc |
25321159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 25326881 - 25326928
Alignment:
| Q |
176 |
taccgttttcatgtatgtaaattggaaaatttccataattgttcttca |
223 |
Q |
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| T |
25326881 |
taccattttcatgtatgtaaattggaaaatttccataatcattcttca |
25326928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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