View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_149 (Length: 264)
Name: NF0412_high_149
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_149 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 41655818 - 41655580
Alignment:
| Q |
30 |
agtttgtggccttcctttaacatcagtttcctgctcacatgagnnnnnnnngttactcctagacagtacggctttttcaatcagaaaaatagaaaggaaa |
129 |
Q |
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| T |
41655818 |
agtttgtgaccttcctttaacgtcagtgtcctgctcacatgagaaaaaca-gttactcctaaactgtatggctttttcaatcagaaaaatagaaaggaaa |
41655720 |
T |
|
| Q |
130 |
ctatacaagaataaacttgacggttcaatttattatgataaataaagacaagtgaaaactaggggcaggg------accctcttaaaaatctaataaaag |
223 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
41655719 |
ctatacaagaataaactcgaccgttcaatttattatgataaataaagacaagtgaaaactaagggcagggaggataaccctcttaaaaatctaataaaag |
41655620 |
T |
|
| Q |
224 |
cagacatatcattgttcttaattaatcaagatacaccaaa |
263 |
Q |
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||| ||||||||||||| |||||||| ||||||||||||| |
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| T |
41655619 |
caggcatatcattgttcctaattaattaagatacaccaaa |
41655580 |
T |
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