View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_high_15 (Length: 464)

Name: NF0412_high_15
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_high_15
NF0412_high_15
[»] chr5 (3 HSPs)
chr5 (7-297)||(32026378-32026668)
chr5 (296-443)||(32026179-32026329)
chr5 (50-91)||(41484312-41484353)
[»] chr1 (3 HSPs)
chr1 (39-297)||(29451510-29451762)
chr1 (57-160)||(35306231-35306335)
chr1 (28-93)||(16300175-16300240)
[»] chr4 (3 HSPs)
chr4 (55-122)||(26829389-26829457)
chr4 (55-109)||(34494467-34494522)
chr4 (56-92)||(12567036-12567072)
[»] chr2 (4 HSPs)
chr2 (56-160)||(7444446-7444549)
chr2 (55-93)||(13016794-13016832)
chr2 (55-93)||(33406638-33406676)
chr2 (56-166)||(8856010-8856122)
[»] chr3 (2 HSPs)
chr3 (34-160)||(35231224-35231351)
chr3 (25-85)||(25909546-25909606)
[»] chr7 (1 HSPs)
chr7 (55-158)||(23416343-23416447)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 32026668 - 32026378
Alignment:
Q  7 ggagcagagaggaacattatggaatgaaatggaatagatagctcatttcattgtttggatattttatgatggagcggaacaaatttatgtttcattgttt 106  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32026668 ggagcataaaggaacattatggaatgaaatggaatagatagctcatttcattgtttggatattttatgatggagcggaacaaatttatgtttcattattt 32026569  T
Q  107 ggattattgacggaatgaaatgggtcataaattttttattccaaatttacccttctttaatttaaaatactaatatataaaagtaaagcatttatattct 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026568 ggattattgacggaatgaaatgggtcataaattttttattccaaatttacccttctttaatttaaaatactaatatataaaagtaaagcatttatattct 32026469  T
Q  207 attaaaatgattagaaaacacataactattgtaccnnnnnnncatataattataatagcaagtggttgaagttacattttctgaaactata 297  Q
    |||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026468 attaaaatgattagaaaacacataactattgtaccaaaaaaacatataattataatagcaagtggttgaagttacattttctgaaactata 32026378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 32026329 - 32026179
Alignment:
Q  296 taattattaataacaggtattaaaaagttaatga----tgaccaacaaaaagtgcagcaagctattttctttaaataaaaaataacgcaagcaagtaatt 391  Q
    ||||||||||||||||||||||||||||  |  |    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32026329 taattattaataacaggtattaaaaagtgcagcaagcttgaccaa-aaaaagtgcagcaagctattttctttaaataaaaaataacgcaagcaagtaatt 32026231  T
Q  392 aatcactacgagaactgttatgtttttacgattgataaattttatgatgatg 443  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  32026230 aatcactacgagaactgttatgcttttacgattgataaattttataatgatg 32026179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 41484353 - 41484312
Alignment:
Q  50 catttcattgtttggatattttatgatggagcggaacaaatt 91  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  41484353 catttcattgtttggatattttacgatggaacggaacaaatt 41484312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 5e-54; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 39 - 297
Target Start/End: Complemental strand, 29451762 - 29451510
Alignment:
Q  39 aatagatagctcatttcattgtttggatattttatgatggagcggaacaaatttatgtttc-attgtttggattattgacggaatgaaatgggtcataaa 137  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||||||||||||  ||| ||| |||||||| ||||     |||| || ||||||||    
T  29451762 aataaatagctcattccattgtttggatattttatgattcagcggaacaaatttatcattccattatttggattgttga-----tgaactgagtcataaa 29451668  T
Q  138 ttttttattccaaatttacccttctttaatttaaaatactaatatataaaagtaaagcatttatattctattaaaatgattagaaaacacataactattg 237  Q
    ||||||||||||| |||||| |||||||||||||||||||| |||||||||  |||||||||||||| | || |||||||||||||||| |||| |||||    
T  29451667 ttttttattccaattttacctttctttaatttaaaatactattatataaaatcaaagcatttatattttttttaaatgattagaaaacatataattattg 29451568  T
Q  238 taccnnnnnnncatataattataatagcaagtggttgaagttacattttctgaaactata 297  Q
    ||         ||||||||||||||| |||||||||||||||||||||||| || |||||    
T  29451567 ta--agaaaaacatataattataataacaagtggttgaagttacattttctaaagctata 29451510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 160
Target Start/End: Original strand, 35306231 - 35306335
Alignment:
Q  57 ttgtttggatattttatgatggagcggaacaaatttatgtttc-attgtttggattattgacggaatgaaatgggtcataaattttttattccaaattta 155  Q
    |||||||| ||| |||||||||||||||| | | || |  ||| ||||||||||  |||||||||||| |||| || |||| ||||||||||||| ||||    
T  35306231 ttgtttgggtatattatgatggagcggaatagaattctcattccattgtttggaaaattgacggaatggaatgagttataatttttttattccaatttta 35306330  T
Q  156 ccctt 160  Q
    |||||    
T  35306331 ccctt 35306335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 16300175 - 16300240
Alignment:
Q  28 gaatgaaatggaatagatagctcatttcattgtttggatattttatgatggagcggaacaaattta 93  Q
    |||||||||||| |||| ||   ||| ||||||||||||||| ||||||||||||||| |||||||    
T  16300175 gaatgaaatggagtagacagtcaattccattgtttggatattatatgatggagcggaataaattta 16300240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 26829457 - 26829389
Alignment:
Q  55 cattgtttggatattttatgatggagcggaacaaatttatgttt-cattgtttggattattgacggaat 122  Q
    |||||||||| ||||||||||||||||||||||||||||  ||| |||||||||||  ||| |||||||    
T  26829457 cattgtttgggtattttatgatggagcggaacaaatttacctttccattgtttggaaaattaacggaat 26829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 34494467 - 34494522
Alignment:
Q  55 cattgtttggatattttatgatggagcggaacaaatttatgttt-cattgtttgga 109  Q
    |||||||||  ||||||||||||||||||||||||||||  ||| |||||||||||    
T  34494467 cattgtttgagtattttatgatggagcggaacaaatttacctttccattgtttgga 34494522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 12567072 - 12567036
Alignment:
Q  56 attgtttggatattttatgatggagcggaacaaattt 92  Q
    ||||||||| |||||||||||||||||||||| ||||    
T  12567072 attgtttgggtattttatgatggagcggaacagattt 12567036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 160
Target Start/End: Original strand, 7444446 - 7444549
Alignment:
Q  56 attgtttggatattttatgatggagcggaacaaatttatgtttcattgtttggattattgacggaatgaaatgggtcataaattttttattccaaattta 155  Q
    |||||||||||| ||||||||||| ||||||  |||| |  |||||||||||||  ||||||| || | || | || |||||||||||||||||| ||||    
T  7444446 attgtttggatactttatgatggaacggaacttattttttattcattgtttgga-aattgacgaaacggaacgagttataaattttttattccaatttta 7444544  T
Q  156 ccctt 160  Q
    |||||    
T  7444545 ccctt 7444549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 13016832 - 13016794
Alignment:
Q  55 cattgtttggatattttatgatggagcggaacaaattta 93  Q
    |||||||||  ||||||||||||||||||||||||||||    
T  13016832 cattgtttgagtattttatgatggagcggaacaaattta 13016794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 33406638 - 33406676
Alignment:
Q  55 cattgtttggatattttatgatggagcggaacaaattta 93  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  33406638 cattgtttggatattttatgatggagcagaacatattta 33406676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 166
Target Start/End: Complemental strand, 8856122 - 8856010
Alignment:
Q  56 attgtttggatattttatgatggagcggaacaaatt-tatgtttcattgtttggattattg-acggaatgaaatgggtcataaattttttattccaaatt 153  Q
    ||||||||| |||| ||||| |||||||||||||||   |||| |||||||||||  | || |||||||| |||| || |||| ||||||||| ||  ||    
T  8856122 attgtttgggtattatatgacggagcggaacaaattacttgttccattgtttggaaaaatgaacggaatggaatgtgttataacttttttatttcatttt 8856023  T
Q  154 tacccttctttaa 166  Q
    ||||||| |||||    
T  8856022 tacccttgtttaa 8856010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 160
Target Start/End: Original strand, 35231224 - 35231351
Alignment:
Q  34 aatggaatagatagctcatttcattgtttggatattttatgatggagcggaacaaatttatgtttc-attgtttggattattgacggaatgaaatgggtc 132  Q
    ||||||||||| || ||| | | |||||||| ||| ||| |||||||||||| | | || |  ||| ||||||||||  |||||||||||| |||| ||     
T  35231224 aatggaatagagagttcactcctttgtttgggtatattacgatggagcggaatagaattctcattccattgtttggaaaattgacggaatggaatgagtt 35231323  T
Q  133 ataaattttttattccaaatttaccctt 160  Q
    |||| ||||||||||||| |||||||||    
T  35231324 ataatttttttattccaattttaccctt 35231351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Complemental strand, 25909606 - 25909546
Alignment:
Q  25 atggaatgaaatggaatagatagctcatttcattgtttggatattttatgatggagcggaa 85  Q
    |||||||  |||||||||||||  ||||| || |||||||||||||||||||||| |||||    
T  25909606 atggaatcgaatggaatagatatttcattccactgtttggatattttatgatggaacggaa 25909546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 158
Target Start/End: Original strand, 23416343 - 23416447
Alignment:
Q  55 cattgtttggatattttatgatggagcggaacaaatt-tatgtttcattgtttggattattgacggaatgaaatgggtcataaattttttattccaaatt 153  Q
    |||||||||| |||| ||  |||||||||||||||||   | || |||||||||||  ||  |||||||| |||| || |||||||||||||||||  ||    
T  23416343 cattgtttgggtattatacaatggagcggaacaaattacttattccattgtttggaaaatgaacggaatggaatgtgttataaattttttattccatttt 23416442  T
Q  154 taccc 158  Q
    |||||    
T  23416443 taccc 23416447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1317 times since January 2019
Visitors: 3079