View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_16 (Length: 459)
Name: NF0412_high_16
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 52175314 - 52175733
Alignment:
| Q |
13 |
attctgactaacattttaatgcaactaatactcagtctctactgtaggtttcttgattaattccttttcacatttcattatcattgattatgagatatac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175314 |
attctgactaacattttaatgcaactaatactcagtctctactgtaggtttcttgattaattccttttcacatttcattatcattgattatgagatatac |
52175413 |
T |
|
| Q |
113 |
atgtttaggacataattccacagttttaagaatgtcaagttgctatcgtagaggtaatgttagta-atcataccttttcaaa--ctagtactgttagtaa |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | | |||| |||||||||||||||| |
|
|
| T |
52175414 |
atgtttaggacataattccacagttttaagaatgtcaagttgctatcgtagaggtaatgag-gtataagagaagaaaacaaatactagtactgttagtaa |
52175512 |
T |
|
| Q |
210 |
tcatagttttgttagtactctaactaacttaatatttttaataagtacattatttcaaactgctgaaatcataatcataaccagaactgattatggtttt |
309 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175513 |
tcatagttttattagtactctaactaacttaatatttttaataagtacattatttcaaactgctgaaatcataatcataaccagaactgattatggtttt |
52175612 |
T |
|
| Q |
310 |
gccaatcataggagaaaatagaaacttaaaatactagaaatgagactgtgccccgaaacaagtaataatggcatcaaagcttcacaagtttgctataatc |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52175613 |
gccaatcataggagaaaatagaaacttaaaatactagaaatgagactgcgccccgaaacaagtaataatggcatcaaagcttcacaagtttgctataatc |
52175712 |
T |
|
| Q |
410 |
aagaaaaattattctctattc |
430 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
52175713 |
aagaaaaattattctctattc |
52175733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1609 times since January 2019
Visitors: 3090