View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_high_169 (Length: 251)

Name: NF0412_high_169
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_high_169
NF0412_high_169
[»] chr4 (6 HSPs)
chr4 (177-251)||(5181476-5181550)
chr4 (178-251)||(5159249-5159322)
chr4 (177-228)||(5194831-5194882)
chr4 (178-239)||(4843278-4843339)
chr4 (138-176)||(4843423-4843461)
chr4 (142-176)||(5172102-5172136)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 177 - 251
Target Start/End: Original strand, 5181476 - 5181550
Alignment:
Q  177 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatt 251  Q
    |||||||||||||||||||||||  |||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  5181476 ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatt 5181550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 178 - 251
Target Start/End: Original strand, 5159249 - 5159322
Alignment:
Q  178 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatt 251  Q
    ||||| ||||||||||||||||  |||| ||||||||||||||||| |||||| ||||||||||||||||||||    
T  5159249 cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatt 5159322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 228
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
Q  177 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5194831 ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc 5194882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 178 - 239
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
Q  178 catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt 239  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||    
T  4843339 cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt 4843278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 4843461 - 4843423
Alignment:
Q  138 gaaaaaatatgttttgtcactctccacataatactcttt 176  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  4843461 gaaaaaatatggtttgccactctccacataatactcttt 4843423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 176
Target Start/End: Original strand, 5172102 - 5172136
Alignment:
Q  142 aaatatgttttgtcactctccacataatactcttt 176  Q
    |||||||||||| ||||||||||||||||||||||    
T  5172102 aaatatgttttgccactctccacataatactcttt 5172136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University