View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_high_174 (Length: 250)

Name: NF0412_high_174
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_high_174
NF0412_high_174
[»] chr7 (3 HSPs)
chr7 (30-250)||(44686989-44687209)
chr7 (182-245)||(431376-431439)
chr7 (178-248)||(31751698-31751768)
[»] chr8 (4 HSPs)
chr8 (157-246)||(43368618-43368707)
chr8 (192-250)||(14949925-14949983)
chr8 (178-238)||(7918720-7918780)
chr8 (218-250)||(30987970-30988002)
[»] chr5 (8 HSPs)
chr5 (192-247)||(11297149-11297204)
chr5 (195-250)||(11457157-11457212)
chr5 (180-250)||(17259276-17259346)
chr5 (213-247)||(18700446-18700480)
chr5 (181-238)||(18286862-18286919)
chr5 (218-250)||(32172712-32172744)
chr5 (218-250)||(38047858-38047890)
chr5 (218-250)||(40499705-40499737)
[»] chr3 (5 HSPs)
chr3 (184-250)||(1810036-1810102)
chr3 (183-250)||(37155060-37155127)
chr3 (183-250)||(37200415-37200482)
chr3 (157-246)||(48588720-48588809)
chr3 (218-250)||(37273193-37273225)
[»] chr6 (2 HSPs)
chr6 (191-238)||(2455684-2455731)
chr6 (180-250)||(32917256-32917326)
[»] chr2 (4 HSPs)
chr2 (180-243)||(25609862-25609925)
chr2 (219-250)||(29936052-29936083)
chr2 (217-250)||(9878660-9878693)
chr2 (177-250)||(43456645-43456718)
[»] chr1 (4 HSPs)
chr1 (177-210)||(14128409-14128442)
chr1 (157-210)||(33723300-33723353)
chr1 (168-244)||(16980868-16980944)
chr1 (218-250)||(17631081-17631113)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 44687209 - 44686989
Alignment:
Q  30 ggcatgctgcttcaaaccctcttcaccatacttatcatatatatttctcttctcgttatccgacaatacctcatatgctgacggcagcaacaataaaaag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44687209 ggcatgctgcttcaaaccctcttcaccatacttatcatatatatttctcttctcgttatccgacaatacctcatatgctggcggcagcaacaataaaaag 44687110  T
Q  130 caaccattaataaaccaaaataagatactgtttgtatcgacttatacgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatgga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44687109 caaccattaataaaccaaaataagatactgtttgtatcgacttatacgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatgga 44687010  T
Q  230 aacaacttaagacatgtccat 250  Q
    ||||||||| |||||||||||    
T  44687009 aacaacttatgacatgtccat 44686989  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 431439 - 431376
Alignment:
Q  182 tatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatg 245  Q
    ||||||||||||||||||||||||||| |  || ||||||||||| |||||||| || ||||||    
T  431439 tatctactaacataaacatttgtgagattgattgaaagagcttatagaaacaacatatgacatg 431376  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 31751698 - 31751768
Alignment:
Q  178 aacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtcc 248  Q
    ||||||| || | |||||| |||||||||||||  ||| |||||||||||||||||||||| |||| ||||    
T  31751698 aacttatgtagtcacataagcatttgtgagactgtttataagagcttatggaaacaacttatgacacgtcc 31751768  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 246
Target Start/End: Original strand, 43368618 - 43368707
Alignment:
Q  157 ctgtttgtatcgacttatacgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgt 246  Q
    ||||||| || |||||||  || ||||||||||||||||| |||||||||||||  ||  || |||||||| |||||||||| |||||||    
T  43368618 ctgtttggattgacttatttgatcttatctactaacataagcatttgtgagactggttgtaacagcttatgaaaacaacttatgacatgt 43368707  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 14949983 - 14949925
Alignment:
Q  192 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    |||||||||||||||||||  |||  |||||||||| ||| |||||| |||||||||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgtccat 14949925  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 7918720 - 7918780
Alignment:
Q  178 aacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaactta 238  Q
    ||||||||||||| |||||||| ||||||||||  ||   |||||||||| ||||||||||    
T  7918720 aacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaactta 7918780  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 30987970 - 30988002
Alignment:
Q  218 agagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||| |||||||||||    
T  30987970 agagcttatggaaacaacttatgacatgtccat 30988002  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 11297149 - 11297204
Alignment:
Q  192 cataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtc 247  Q
    |||||||| |||| |||||  || ||||||||||||||||||||||||||||||||    
T  11297149 cataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgtc 11297204  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 11457212 - 11457157
Alignment:
Q  195 aaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    ||||| ||||||||||  ||  |||||||||||||||||||||| |||||||||||    
T  11457212 aaacacttgtgagactgttttgaagagcttatggaaacaacttatgacatgtccat 11457157  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 17259346 - 17259276
Alignment:
Q  180 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||| || ||||||||||| || |  |||||| ||||||||||||  |||||| ||||    
T  17259346 cttatctactaacataagcacttgtgagacttgttgagtgagcttttggaaacaacttttgacatgaccat 17259276  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Complemental strand, 18700480 - 18700446
Alignment:
Q  213 ttaaaagagcttatggaaacaacttaagacatgtc 247  Q
    |||||||||||||||||||||||||| ||||||||    
T  18700480 ttaaaagagcttatggaaacaacttatgacatgtc 18700446  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 18286919 - 18286862
Alignment:
Q  181 ttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaactta 238  Q
    ||||||||||| |||| |||||| |||||   |||||||||||||| |||||||||||    
T  18286919 ttatctactaatataagcatttgcgagaccgtttaaaagagcttattgaaacaactta 18286862  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 32172744 - 32172712
Alignment:
Q  218 agagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||| |||||||||||    
T  32172744 agagcttatggaaacaacttatgacatgtccat 32172712  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 38047858 - 38047890
Alignment:
Q  218 agagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||| |||||||||||    
T  38047858 agagcttatggaaacaacttatgacatgtccat 38047890  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 40499705 - 40499737
Alignment:
Q  218 agagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||| |||||||||||    
T  40499705 agagcttatggaaacaacttatgacatgtccat 40499737  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 250
Target Start/End: Complemental strand, 1810102 - 1810036
Alignment:
Q  184 tctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||| || ||||||||||  || | |||||||| |||||||||||| |||||||||||    
T  1810102 tctactaacataatcacttgtgagactatttgagagagcttacggaaacaacttatgacatgtccat 1810036  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 37155127 - 37155060
Alignment:
Q  183 atctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||| ||||||||||||||||||||  |  |||||| ||||||||| ||||||  ||||||||||    
T  37155127 atctacttacataaacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccat 37155060  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 37200482 - 37200415
Alignment:
Q  183 atctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||| ||||||||||||||||||||  |  |||||| ||||||||| ||||||  ||||||||||    
T  37200482 atctacttacataaacatttgtgagactgttcgaaagagtttatggaaataacttattacatgtccat 37200415  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 246
Target Start/End: Complemental strand, 48588809 - 48588720
Alignment:
Q  157 ctgtttgtatcgacttatacgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgt 246  Q
    ||||||| |||| |||||  |||||||| |||| | | |||||||||||||| | ||| | |||||||||  |||||||||| |||||||    
T  48588809 ctgtttgaatcggcttatttgaacttatttacttatacaaacatttgtgagattgcttgagagagcttatataaacaacttatgacatgt 48588720  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 37273225 - 37273193
Alignment:
Q  218 agagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||| |||||||||||    
T  37273225 agagcttatggaaacaacttatgacatgtccat 37273193  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 191 - 238
Target Start/End: Complemental strand, 2455731 - 2455684
Alignment:
Q  191 acataaacatttgtgagacttcttaaaagagcttatggaaacaactta 238  Q
    |||||| |||||||||||||  || |||||||||||||||||||||||    
T  2455731 acataagcatttgtgagactgtttgaaagagcttatggaaacaactta 2455684  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Complemental strand, 32917326 - 32917256
Alignment:
Q  180 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    |||| ||||||  ||||||| ||||||||||  ||   ||||||||||||||||||||| |||||||||||    
T  32917326 cttacctactagaataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgtccat 32917256  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 243
Target Start/End: Complemental strand, 25609925 - 25609862
Alignment:
Q  180 cttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagaca 243  Q
    |||||||||||||||||  | |||||||||| |||  || ||||||||||||||||||| ||||    
T  25609925 cttatctactaacataagaacttgtgagactgcttggaatagcttatggaaacaacttatgaca 25609862  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 219 - 250
Target Start/End: Complemental strand, 29936083 - 29936052
Alignment:
Q  219 gagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||||||||||||||    
T  29936083 gagcttatggaaacaacttaagacatgtccat 29936052  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 9878660 - 9878693
Alignment:
Q  217 aagagcttatggaaacaacttaagacatgtccat 250  Q
    |||||||||||||||||||||| |||||||||||    
T  9878660 aagagcttatggaaacaacttatgacatgtccat 9878693  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 43456645 - 43456718
Alignment:
Q  177 gaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacatgtccat 250  Q
    |||||||| |||| ||||||||| |||| |||||  || ||||||||| || |||||||| | |||||||||||    
T  43456645 gaacttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccat 43456718  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 210
Target Start/End: Original strand, 14128409 - 14128442
Alignment:
Q  177 gaacttatctactaacataaacatttgtgagact 210  Q
    |||||||||||||| |||||||||||||||||||    
T  14128409 gaacttatctactagcataaacatttgtgagact 14128442  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 33723300 - 33723353
Alignment:
Q  157 ctgtttgtatcgacttatacgaacttatctactaacataaacatttgtgagact 210  Q
    ||||||| || |||||||  |||||||||||||| |||||||| ||||||||||    
T  33723300 ctgtttggattgacttatttgaacttatctactaccataaacacttgtgagact 33723353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 16980944 - 16980868
Alignment:
Q  168 gacttatacgaacttatctactaacataaacatttgtgagacttcttaaaagagcttatggaaacaacttaagacat 244  Q
    |||||||  |||||||| ||| |||||||  | ||||||||||  || | ||||||||||||||||||||| |||||    
T  16980944 gacttatttgaacttatataccaacataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 17631081 - 17631113
Alignment:
Q  218 agagcttatggaaacaacttaagacatgtccat 250  Q
    ||||||||||||||||||||| |||||||||||    
T  17631081 agagcttatggaaacaacttatgacatgtccat 17631113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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