View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_175 (Length: 249)
Name: NF0412_high_175
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_175 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 27 - 249
Target Start/End: Complemental strand, 25602378 - 25602156
Alignment:
| Q |
27 |
ataagtaaaggtacaaagacttggagtagatagttcaattgtgtcagttatggtaaattcgagtgaacgattgtagatagataaattgactagggtttca |
126 |
Q |
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| T |
25602378 |
ataagtaaaggtacgaagacttggagtagatagttcaattttgtcagttatggtaaatttgagtgaacggttatagatagataaattgactagggtttca |
25602279 |
T |
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| Q |
127 |
cttgatatgacaaagacacgtgcattccttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgcttt |
226 |
Q |
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| T |
25602278 |
cttgatatgacaaagacacgtgcgttccttacctcacaattctgaatgaccaaactattcaacattttaaaggccaaaaagggttcaacacaactgcttt |
25602179 |
T |
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| Q |
227 |
catcaccgtaaaaggcaaaattc |
249 |
Q |
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| T |
25602178 |
catcaccgcaaaaggcaaaattc |
25602156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 43 - 249
Target Start/End: Complemental strand, 25597566 - 25597360
Alignment:
| Q |
43 |
agacttggagtagatagttcaattgtgtcagttatggtaaattcgagtgaacgattgtagatagataaattgactagggtttcacttgatatgacaaaga |
142 |
Q |
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| T |
25597566 |
agacttggagtagataactcaattttgtcggttatggtatcttcgtgcgggctattgttgatagataaattgactagggtttcacttgatatgaccaaga |
25597467 |
T |
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| Q |
143 |
cacgtgcattccttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccgtaaaaggc |
242 |
Q |
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| T |
25597466 |
cacgggcatcccttacctcacatttctgaatgaccaaactattcaacattttaaaggcgaaaaagggctcaacacaactgctttcatcaccgcaaaaggc |
25597367 |
T |
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| Q |
243 |
aaaattc |
249 |
Q |
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| T |
25597366 |
aaaattc |
25597360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 42602439 - 42602516
Alignment:
| Q |
171 |
aatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccgtaaaaggcaaaatt |
248 |
Q |
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| T |
42602439 |
aatgaccaaactattcaacctggtaaaggtcaaaaagggttcagcacgaccattttcatcaccgcaaaaggcaaaatt |
42602516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 36643187 - 36643257
Alignment:
| Q |
170 |
gaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccgtaaaag |
240 |
Q |
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| T |
36643187 |
gaatgcccaaactattcaactttggaaaggccaaaaagggatcagcacaaccgctttcaccaccgcaaaag |
36643257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 248
Target Start/End: Complemental strand, 36629866 - 36629773
Alignment:
| Q |
155 |
ttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccgtaaaaggcaaaatt |
248 |
Q |
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| T |
36629866 |
ttacctcacaactacgaaggatcaaactattcaactttgtaaaggtcgaaaagggctcagcacaaccgttttcaccgccgcaaaaggcaaaatt |
36629773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 38862703 - 38862740
Alignment:
| Q |
29 |
aagtaaaggtacaaagacttggagtagatagttcaatt |
66 |
Q |
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| T |
38862703 |
aagtaaaggtacatagacttggagtagatagctcaatt |
38862740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 234
Target Start/End: Original strand, 55966578 - 55966666
Alignment:
| Q |
146 |
gtgcattccttacctcacaattctgaatgaccaaactattcaacattttaaaggacaaaaagggttcaacacaactgctttcatcaccg |
234 |
Q |
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|||||| ||||||||||||| |||||||||||||| ||||| | ||||| ||||||||| ||| |||||| | ||||||||||| |
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| T |
55966578 |
gtgcatcccttacctcacaaacacgaatgaccaaactactcaacttggtaaagcccaaaaagggctcagcacaaccgttttcatcaccg |
55966666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 19657760 - 19657805
Alignment:
| Q |
27 |
ataagtaaaggtacaaagacttggagtagatagttcaattgtgtca |
72 |
Q |
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| T |
19657760 |
ataagtaaaggtacaaagacttgaagtagataactcaattttgtca |
19657805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 19674599 - 19674644
Alignment:
| Q |
27 |
ataagtaaaggtacaaagacttggagtagatagttcaattgtgtca |
72 |
Q |
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| T |
19674599 |
ataagtaaaggtacaaagacttgaagtagataactcaattttgtca |
19674644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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