View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_181 (Length: 247)
Name: NF0412_high_181
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_181 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 341593 - 341653
Alignment:
| Q |
1 |
taggccgtagaaagtgaatgtttgttggaaatcatgtagtagtcc-ttagtatcagaatat |
60 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
341593 |
taggccggagaaagtgaaggtttgttggaaatcatgtagtagtcctttagtatcaaaatat |
341653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20002528 - 20002468
Alignment:
| Q |
1 |
taggccgtagaaagtgaatgtttgttggaaatcatgtagtagtcc-ttagtatcagaatat |
60 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
20002528 |
taggccggagaaagtgaaggtttgttggaaatcatgttgtagtcctttagtatcagaatat |
20002468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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