View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_208 (Length: 212)
Name: NF0412_high_208
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_208 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 34626132 - 34626315
Alignment:
| Q |
14 |
tggtggggtgtacctaaagacactctgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgataggtgatgacgta |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34626132 |
tggtggggtgtacctaaaaacactctgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttaataggtgatgacgta |
34626231 |
T |
|
| Q |
114 |
agacttgtataatttgaaagagttcgtattagacttatttttatggtattaaatataattagtgataaaccacagtttctctct |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34626232 |
agactcgtataatttgaaagagttcgtattagacttatttttatggtattaaaaataattagtgataaaccacagtttctctct |
34626315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 14493570 - 14493493
Alignment:
| Q |
47 |
aagtcagtata-tgattgaggtgggtgagaggtttagaatgagacatactttgataggtgatgacgtaagacttgtat |
123 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||| | |||||| || |||||||||| |
|
|
| T |
14493570 |
aagtcagtataatgattgaggtgggtgagaggtttaaaatgagacctaccttgattgatgatgatgtgagacttgtat |
14493493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 36128292 - 36128356
Alignment:
| Q |
39 |
tgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgatagg |
103 |
Q |
| |
|
|||||| ||||||||||| || ||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
36128292 |
tgacgtttaagtcagtatgtgtttgaggtggatgagacgtttagaatgagacataccttgatagg |
36128356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 93
Target Start/End: Complemental strand, 24850735 - 24850687
Alignment:
| Q |
45 |
ctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacata |
93 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24850735 |
ctaaggcaatatatgattgaggtgggtgagaggtttagaatgagacata |
24850687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 28397208 - 28397146
Alignment:
| Q |
47 |
aagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgataggtgatga |
109 |
Q |
| |
|
|||||| ||||||||||||||| |||| || |||| ||||||| ||| |||||||||| |||| |
|
|
| T |
28397208 |
aagtcaatatatgattgaggtgtgtgaaagatttataatgagagataatttgataggtaatga |
28397146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 36159458 - 36159531
Alignment:
| Q |
34 |
cactctgacgtctaagtcagtatatgattgaggtgggtgagaggtttagaatgagacatactttgataggtgat |
107 |
Q |
| |
|
|||||||||| | || ||||||||||||| |||| |||||| ||||| || ||| ||||| |||||||||||| |
|
|
| T |
36159458 |
cactctgacgcccaaatcagtatatgattaaggtaagtgagaagtttaaaacgagtcataccttgataggtgat |
36159531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1073 times since January 2019
Visitors: 3075