View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_22 (Length: 436)
Name: NF0412_high_22
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 27243818 - 27244046
Alignment:
| Q |
30 |
gctactactcaaaggtaataatagatcaatgtttacaactatcataagagcactatcactctctcaccaatttacaatgcggtgttaacg-ttaaggatg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27243818 |
gctactactcaaaggtaataatagatcaatgtttacatctatcataagagcactatcactctctcaccaatttacaatgcggtgttaactattaaggatg |
27243917 |
T |
|
| Q |
129 |
tagagacaaatgatatttgatcgatcaatcgatcccatcaaattgttttcttgatgatggttgaaaaatcaatctaaagacttccactgatttgaatcat |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
27243918 |
tagagacaaatgatatttgatcgatcaatcgatcccatcaaattgttttcttgatgatggttgaaaaatcagtctaaggacttccactgatttgaatcat |
27244017 |
T |
|
| Q |
229 |
tggttaattcatctgcttagtgtttatga |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
27244018 |
tggttaattcatctgcttagtgtttatga |
27244046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 353 - 418
Target Start/End: Original strand, 27244144 - 27244209
Alignment:
| Q |
353 |
cgaaaatgttgtatttaacgaaaataatttcgtgaaagatagcaaacaaatgtattgttactatag |
418 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27244144 |
cgaaaatgttgtatataacgaaaataatttcgtgaaagatagcgaacaaatgtattgttactatag |
27244209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1529 times since January 2019
Visitors: 3089