View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_32 (Length: 395)
Name: NF0412_high_32
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 176 - 380
Target Start/End: Original strand, 2926430 - 2926634
Alignment:
| Q |
176 |
tcaatagtttgtaagaaatcatgctcattttcatgttacaacactaatttgttcaaaaacttctattgagattaaattttgtggctatccttaactgatg |
275 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2926430 |
tcaatattttgtaagaaatcatgctcactttcatgatacaacactaatttgttcaaatacttctattgagattaaattttgtggctatccttaactgatg |
2926529 |
T |
|
| Q |
276 |
ccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaataactttagcctagtagacatcct |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2926530 |
ccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaataactttagcctagtagacatcct |
2926629 |
T |
|
| Q |
376 |
tgaag |
380 |
Q |
| |
|
||||| |
|
|
| T |
2926630 |
tgaag |
2926634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 30 - 179
Target Start/End: Original strand, 2920614 - 2920764
Alignment:
| Q |
30 |
tgtctgcatgtcctttttatctgtttgttagtctgaa-ggtcaaattatcccttgtataatatctgttttattatagtgtattgtatctattttatctga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2920614 |
tgtctgcatgtcctttttatctgtttgttagtctgaacggtcaaattatcccttgtataatacctgttttattatagtgtattgtatctattttatctga |
2920713 |
T |
|
| Q |
129 |
acttatctaactttcagttgtaataaatatatttatgttgtatgttttcaa |
179 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2920714 |
acttatctaaatttcagttgtaataaatatattcatgttgtatgttttcaa |
2920764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 178 - 382
Target Start/End: Original strand, 2921028 - 2921227
Alignment:
| Q |
178 |
aatagtttgtaagaaatcatgctcattttcatgttacaacactaatttgttcaaaaacttctattgagattaaattttgtggctatccttaactgatgcc |
277 |
Q |
| |
|
|||| |||||||||||||| ||||| ||||||| || || |||||||||||||| |||||||||||| |||| |||| ||| | || ||||| ||| || |
|
|
| T |
2921028 |
aatattttgtaagaaatcaagctcactttcatgata--acgctaatttgttcaaatacttctattgaggttaatttttttggttgtcgttaaccgatacc |
2921125 |
T |
|
| Q |
278 |
atgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaataactttagcctagtagacatccttg |
377 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2921126 |
atgattataaaccaaattt-tttagcaaagtgaggtttcattatatttaacgaaaaagt--attatttcaagaataactttagcctagtagacattcttg |
2921222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 2925999 - 2926108
Alignment:
| Q |
30 |
tgtctgcatgtcctttttatctgtttgttagtctgaa-ggtcaaattatcccttgtataatatctgttttattatagtgtattgtatctattttatctga |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2925999 |
tgtctgcatgtcctttttatctgtttgttagtctgaacggtcaaattatcccttgtataatacctgttttattatagtgtattgtatctattttatctga |
2926098 |
T |
|
| Q |
129 |
acttatctaa |
138 |
Q |
| |
|
|||||||||| |
|
|
| T |
2926099 |
acttatctaa |
2926108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 253 - 358
Target Start/End: Original strand, 2921811 - 2921916
Alignment:
| Q |
253 |
tttgtggctatccttaactgatgccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatttcaagaat |
352 |
Q |
| |
|
||||||| | ||||||| |||| |||||| |||||| |||| ||||||| ||||||||| |||||||| |||||| ||||||||||| |||| ||||||| |
|
|
| T |
2921811 |
tttgtggttgtccttaaatgataccatgaatataaatcaaaattctttaccaaagtgagatttcattacatttcatgaaaaagttgagtattacaagaat |
2921910 |
T |
|
| Q |
353 |
aacttt |
358 |
Q |
| |
|
||||| |
|
|
| T |
2921911 |
cacttt |
2921916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 276 - 344
Target Start/End: Original strand, 2927331 - 2927399
Alignment:
| Q |
276 |
ccatgattataaaccaaatttctttagcaaagtgaggtttcattatatttcacgaaaaagttgattatt |
344 |
Q |
| |
|
|||||| ||||||||||| ||||||| ||||||||| |||||||| |||||| |||||||||||||||| |
|
|
| T |
2927331 |
ccatgaatataaaccaaaattctttaccaaagtgagatttcattacatttcatgaaaaagttgattatt |
2927399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 2926833 - 2926888
Alignment:
| Q |
105 |
gtgtattgtatctattttatctgaacttatctaactttcagttgtaataaatatat |
160 |
Q |
| |
|
||||||||||| |||||||| || ||||||||| |||||||||||||| |||||| |
|
|
| T |
2926833 |
gtgtattgtatttattttatatgtacttatctatatttcagttgtaatatatatat |
2926888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 158
Target Start/End: Complemental strand, 31346643 - 31346590
Alignment:
| Q |
105 |
gtgtattgtatctattttatctgaacttatctaactttcagttgtaataaatat |
158 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
31346643 |
gtgtattgtatctattttatccgaacttatctaaatttcagttgtaatatatat |
31346590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 158
Target Start/End: Complemental strand, 31357282 - 31357232
Alignment:
| Q |
108 |
tattgtatctattttatctgaacttatctaactttcagttgtaataaatat |
158 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |||||||||||||| |||| |
|
|
| T |
31357282 |
tattgtatctattttatccgaacttatctaaatttcagttgtaatatatat |
31357232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 778 times since January 2019
Visitors: 3065