View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_34 (Length: 391)
Name: NF0412_high_34
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 28 - 384
Target Start/End: Original strand, 14621967 - 14622323
Alignment:
| Q |
28 |
cacttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactgg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14621967 |
cacttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactgg |
14622066 |
T |
|
| Q |
128 |
ttaccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattgg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14622067 |
ttaccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattgg |
14622166 |
T |
|
| Q |
228 |
ttaccgtcgatagccaagagtttcaacattccttgtgcgtattacagcgtagcagcagcttggaacttgggtttctttaatccaccaagggaacgaaccc |
327 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14622167 |
ttaccgtcgataaccaagagtttcaacattccttgtgcgtattacagcgtagccgcagcttggaacttgggtttctttaatccaccaggggaacgaaccg |
14622266 |
T |
|
| Q |
328 |
acatagacttgtatagtccaccaaaatgggctcctttccaaacaaccattcatctca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
14622267 |
acatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcatctca |
14622323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 28 - 384
Target Start/End: Original strand, 14588309 - 14588665
Alignment:
| Q |
28 |
cacttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactgg |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14588309 |
cacttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactgg |
14588408 |
T |
|
| Q |
128 |
ttaccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattgg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14588409 |
ttaccttaagttagcttatgatggtttccaagaccgtgttactgagatattcaaaacttcgaagcctgattgggttttctgtgatttagtatcggattgg |
14588508 |
T |
|
| Q |
228 |
ttaccgtcgatagccaagagtttcaacattccttgtgcgtattacagcgtagcagcagcttggaacttgggtttctttaatccaccaagggaacgaaccc |
327 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
14588509 |
ttaccatcgatagccaagagtttcaacattccttgtgcgtattacagcataggcgcagctcggaacttggttttctttaatccaccaggggaacgaaccg |
14588608 |
T |
|
| Q |
328 |
acatagacttgtatagtccaccaaaatgggctcctttccaaacaaccattcatctca |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
14588609 |
acatagacttgtatagtccaccaaaatgggttcctttccaaacaaccattcatctca |
14588665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 131 - 265
Target Start/End: Original strand, 12845949 - 12846083
Alignment:
| Q |
131 |
ccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattggtta |
230 |
Q |
| |
|
||||||||| |||||||||||| ||||||| |||||| |||||||||||||| || || ||||| |||||||||| |||| | | | || |||||| |
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|
| T |
12845949 |
ccttaagttggcttatgatggtctccaagatgatgttactgagatactcaaaacatcaaaccctgactgggttttctatgattttgctaccgaatggtta |
12846048 |
T |
|
| Q |
231 |
ccgtcgatagccaagagtttcaacattccttgtgc |
265 |
Q |
| |
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||||| |||||||| ||||| ||||| |||||||| |
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|
| T |
12846049 |
ccgtcaatagccaaaagtttgaacatcccttgtgc |
12846083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 31 - 380
Target Start/End: Original strand, 11529854 - 11530203
Alignment:
| Q |
31 |
ttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactggtta |
130 |
Q |
| |
|
|||| ||||||||||| |||||||||| ||| ||||| |||||||| ||||| |||||||||| ||||||||||||||||| |||||| |||||||| |
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|
| T |
11529854 |
ttcagccattcatcaatttggtaaaattacccttaccccacatagaacaactagaaggtgcagagagcactcaaaatgttccattaaacaagactggtta |
11529953 |
T |
|
| Q |
131 |
ccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattggtta |
230 |
Q |
| |
|
||||||||| |||||||| ||| |||||| | |||||| |||||||||||||| || ||| ||||||||||||||| |||| ||| | ||||||||| |
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|
| T |
11529954 |
ccttaagttggcttatgacggtctccaagtcgatgttactgagatactcaaaacatcaaagtctgattgggttttctatgattgtgtagctgattggtta |
11530053 |
T |
|
| Q |
231 |
ccgtcgatagccaagagtttcaacattccttgtgcgtattacagcgtagcagcagcttggaacttgggtttctttaatccaccaagggaacgaacccaca |
330 |
Q |
| |
|
|||||||||||||| || | || ||||||||||| |||||||| | | ||||||||||| | |||||||||||||||||| ||| | || | ||| |
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|
| T |
11530054 |
ccgtcgatagccaaaagcctgaatattccttgtgcccattacagcattgttccagcttggaacatatgtttctttaatccaccaaaggatcaaatcaaca |
11530153 |
T |
|
| Q |
331 |
tagacttgtatagtccaccaaaatgggctcctttccaaacaaccattcat |
380 |
Q |
| |
|
||||| |||||| |||||||| |||| ||||||| |||||||||||||| |
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|
| T |
11530154 |
tagacaggtatagcccaccaaagtgggttcctttcgaaacaaccattcat |
11530203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 380
Target Start/End: Original strand, 29953889 - 29954238
Alignment:
| Q |
31 |
ttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactggtta |
130 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| || ||| | |||||| |
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|
| T |
29953889 |
ttcaaccattcatcaatttggtaaaatcacctttaccatacatagaacaactacaaggtggagagagcactcaaaatgttccatttaacatgcttggtta |
29953988 |
T |
|
| Q |
131 |
ccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattggtta |
230 |
Q |
| |
|
||||| || |||||||| ||| |||||||| |||||| ||||||||||||||||| ||||||||||||||||| | |||| | | | ||||||||| |
|
|
| T |
29953989 |
tcttaaattggcttatgacggtctccaagacgatgttactgagatactcaaaacttcaaagcctgattgggttttatatgattatgcagctgattggtta |
29954088 |
T |
|
| Q |
231 |
ccgtcgatagccaagagtttcaacattccttgtgcgtattacagcgtagcagcagcttggaacttgggtttctttaatccaccaagggaacgaacccaca |
330 |
Q |
| |
|
||||| ||||| || || |||||||||||||||| |||||| ||| | ||||||||||| | |||| | |||||||||| ||| | || | ||| |
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|
| T |
29954089 |
ccgtcaatagcgaaaagcctcaacattccttgtgctcattacaacgttgtcccagcttggaacatatgtttatcaaatccaccaaaggatcaaatcaaca |
29954188 |
T |
|
| Q |
331 |
tagacttgtatagtccaccaaaatgggctcctttccaaacaaccattcat |
380 |
Q |
| |
|
|||| || ||| |||||||| |||| |||||| |||||| |||||||| |
|
|
| T |
29954189 |
tagataggtgtagcccaccaaagtgggttccttttcaaacatccattcat |
29954238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 319
Target Start/End: Complemental strand, 51370564 - 51370276
Alignment:
| Q |
31 |
ttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactggtta |
130 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| | |||||| |||||||||||| ||| |||| || ||| |||| |||| | | |||||| |
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|
| T |
51370564 |
ttcaaccattcatcaatttggttaaatcacctttaccacatatagaacaactacaaggtgaagagagcatgcagaatattccaaaaaacatgattggtta |
51370465 |
T |
|
| Q |
131 |
ccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgatgtagtatcggattggtta |
230 |
Q |
| |
|
|||||||| |||||||| ||| | |||||| |||||| || |||||||||||||| ||||||||||||||||||| |||| | | | |||||||| |
|
|
| T |
51370464 |
tcttaagttggcttatgacggtctacaagacaatgttactgatatactcaaaacttcaaagcctgattgggttttctatgattgtgcagctgattggttg |
51370365 |
T |
|
| Q |
231 |
ccgtcgatagccaagagtttcaacattccttgtgcgtattacagcgtagcagcagcttggaacttgggtttctttaatccaccaaggga |
319 |
Q |
| |
|
||| | || ||||| || | |||||||||||||| ||||||| || ||||||| |||| | |||||||||||||||| ||||| |
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|
| T |
51370364 |
ccggcaattgccaaaagccttaacattccttgtgctcattacagtatactcgcagctttgaacgtatgtttctttaatccacctaggga |
51370276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 20492024 - 20492205
Alignment:
| Q |
31 |
ttcaaccattcatcaagttggtaaaatcacctttaccatacatagaagaactacaaggtgcagaaagcactcaaaatgttccgttaaacctaactggtta |
130 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||| ||||||| || ||||| ||| || | |||| | |
|
|
| T |
20492024 |
ttcaaccattcatcaatttggtaaaatcacctttaccatacatagaacaactacatggtgaagagagcactcttaaggttccattagacaagaatggtca |
20492123 |
T |
|
| Q |
131 |
ccttaagttagcttatgatggtttccaagaccgtgttaccgagatactcaaaacttcgaagcctgattgggttttctgtgat |
212 |
Q |
| |
|
|||||| || |||||||||||||| ||||||| |||||| || ||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
20492124 |
ccttaaattggcttatgatggttttcaagaccatgttactgaaatacttaaaacttcaaagcctgattgggttttctatgat |
20492205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 384
Target Start/End: Original strand, 1361556 - 1361595
Alignment:
| Q |
345 |
ccaccaaaatgggctcctttccaaacaaccattcatctca |
384 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
1361556 |
ccaccaaaatgggttccttttcaaacaaccattcatctca |
1361595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 1357250 - 1357291
Alignment:
| Q |
171 |
gagatactcaaaacttcgaagcctgattgggttttctgtgat |
212 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||| |||| |
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|
| T |
1357250 |
gagatactcaaaacttcaaatcctgattgggttttctatgat |
1357291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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