View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_40 (Length: 379)
Name: NF0412_high_40
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_40 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 30 - 369
Target Start/End: Original strand, 2267324 - 2267663
Alignment:
| Q |
30 |
agtattcaattctttcttttgnnnnnnnnnttacattaattcatccctcatacatgaaaatatttcataaatgattgaagacatcgtttataattaaaga |
129 |
Q |
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| T |
2267324 |
agtattcaattctttcttttgaaaaaaaaattacatttattcatcccttatacatgaaagtatttcataaatgattgaagacatcgtttataattaaaga |
2267423 |
T |
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| Q |
130 |
tcaatactaatttagactctaaaacagaaaaatccgtgaacaaagtgtcacctaatcagagaggcgtgatatatgtgatatctcttcatgtgctggtata |
229 |
Q |
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| T |
2267424 |
tcaatactaatttagactctaaaacagaagaatccgtgaacaaagtgtcacctaatcagagaggcttgatatatgtgatatctcttcatgtgctggtata |
2267523 |
T |
|
| Q |
230 |
cgagttacaattgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaagagact |
329 |
Q |
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| T |
2267524 |
cgagttacagttgtgacaccaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaatctgtaattctattcagtaagaagagact |
2267623 |
T |
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| Q |
330 |
gaatccaaattatttcacttgttctagtggctagtctctg |
369 |
Q |
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| T |
2267624 |
gaatccaaattatttcacttgttccagtggctagtctctg |
2267663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 239 - 363
Target Start/End: Complemental strand, 650638 - 650519
Alignment:
| Q |
239 |
attgtgacaccaggagataatgcattgactgtcatagtagttgattggaaccgaaacacgaatctgtaattctattcagtaagaagagactgaatccaaa |
338 |
Q |
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| T |
650638 |
attgtgacacgaggagacaatgcattgactgtcatagtagttgattggaactgaaacacgaacctgta-----attcagtaagaagagactgaatccaaa |
650544 |
T |
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| Q |
339 |
ttatttcacttgttctagtggctag |
363 |
Q |
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| T |
650543 |
ttatttcacttgttcttatggctag |
650519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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