View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_52 (Length: 364)
Name: NF0412_high_52
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_52 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 48 - 352
Target Start/End: Original strand, 1100754 - 1101059
Alignment:
| Q |
48 |
tatggtttttattcaattaacaaatcattgctatattgaatgaaattaaggggttaatgctataattatatcttttaatggacctttaagagaggagatg |
147 |
Q |
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| T |
1100754 |
tatggtttttattcaattaacaaatcattgctatattgaatgaaattaaggggttaatgctataattatatcttttaatggacctttaagagaggagatg |
1100853 |
T |
|
| Q |
148 |
ttgtggttttggagttctacttcttacatggaaacattacagagatgagaagggcggagaggggtgggtggg-gtaggtattgtgcgtgagaatatacat |
246 |
Q |
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| T |
1100854 |
ttgtggttttggagttctacttcttacatggaaacattacagagatgagaagagcggagaggggtgggtgggactaggtattgtgcgtgagaatatacat |
1100953 |
T |
|
| Q |
247 |
gtgttctcacttttatttctaaatcgttttaacctttaattatcttgtaatagatctaatgttgtataaaagtggtcaaccaatgaaccacttggttgat |
346 |
Q |
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| T |
1100954 |
gtgttctcacttttatttctaaatcgttttaacctttaattatcttgtaatagatctaatggtgtataaaagtggtccaccaatgaaccacttggttgat |
1101053 |
T |
|
| Q |
347 |
ggttca |
352 |
Q |
| |
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|||||| |
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| T |
1101054 |
ggttca |
1101059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 232 - 354
Target Start/End: Complemental strand, 14050320 - 14050197
Alignment:
| Q |
232 |
cgtgagaatatacatgtgttctcacttttatttctaaatcgttttaacctttaattatct-tgtaatagatctaatgttgtataaaagtggtcaaccaat |
330 |
Q |
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| T |
14050320 |
cgtgaaaatatacctatattctcacttttatttctaagtcatctcaatatttaattatctctgtaatagatctaacagagtataaaagtagttcaccgat |
14050221 |
T |
|
| Q |
331 |
gaaccacttggttgatggttcatc |
354 |
Q |
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|||||||||| ||||||||||||| |
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| T |
14050220 |
gaaccacttgtttgatggttcatc |
14050197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 352
Target Start/End: Complemental strand, 45281806 - 45281709
Alignment:
| Q |
260 |
tatttctaaatcgttttaacctttaattatctt------gtaatagatctaatgttgtataaaagtggtcaaccaatgaaccacttggttgatggttca |
352 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| |||||||| ||||||||||||||| |||||||||| ||| | ||||||||| |
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| T |
45281806 |
tatttctaactcgttttaacctttaattatcttaatcttgtaataaatctaatggtgtataaaagtggtc-cgcaatgaaccatttgatcgatggttca |
45281709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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