View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_56 (Length: 360)
Name: NF0412_high_56
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_56 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 32 - 346
Target Start/End: Complemental strand, 34012511 - 34012197
Alignment:
| Q |
32 |
ggtaactagaaaccaaccatctataaatagacacatacacgtgtcacttatagagattgcatagaagaaaagtgggtccacaaataaccccattgcacac |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34012511 |
ggtaactagaaaccaaccatctataaatagacacatacacgtgtcacttatagagattgcatagaagaaaagtgggtccacaaataaccccattgcacac |
34012412 |
T |
|
| Q |
132 |
accaaaagaaatactctattccattcttcagcccattttcctcttggatcaagtaataccttactcaatgaaaaagaagatgaacaacgtttttgtggct |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34012411 |
accaaaagaaatactctattccattcttcagcccattttcctcttggatcaagtaataccttactcaatgaaaaagaagatgaacaacgtttttgtggct |
34012312 |
T |
|
| Q |
232 |
gtttggtttcttctttttcataatcttcttcgtagtgatactgatactcgtcctcctcgtactcgtcgctatcgttaacaacctcgttgttgacgatatc |
331 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34012311 |
gtttggtttcttctttttcatcatcttcttcgtagtgatactgatactcgtcctcctcgtactcgtcgctatcgttaacaacctcgttgttgacgatatc |
34012212 |
T |
|
| Q |
332 |
gtcgatgtcatcatc |
346 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34012211 |
gtcgatgtcatcatc |
34012197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1862 times since January 2019
Visitors: 3094