View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_60 (Length: 352)
Name: NF0412_high_60
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 76 - 321
Target Start/End: Original strand, 21199945 - 21200188
Alignment:
| Q |
76 |
gcgggtttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctaga |
175 |
Q |
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| T |
21199945 |
gcggttttgttaaggaaactgctgcatttattatttcagacgatctttatgtgatgcctaatgtttttgggacagttatacaactacttcacaagctgga |
21200044 |
T |
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| Q |
176 |
aatctctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatactttcttattcaacttgcttctgaactgtattatctatgc |
275 |
Q |
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| T |
21200045 |
aatctctgatattggcac-atcacggaacaaactgttgatatcagcaagaaagaggcatgctttcttatgcaactctcttcggaactatattatctatgc |
21200143 |
T |
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| Q |
276 |
cgttgattatttgtttttctcattaaatatttttacttttgcaggt |
321 |
Q |
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| T |
21200144 |
cgttgattatttg-ttttctcattaaatatttttacttttgcaggt |
21200188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 76 - 315
Target Start/End: Original strand, 21194692 - 21194934
Alignment:
| Q |
76 |
gcgggtttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctaga |
175 |
Q |
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| T |
21194692 |
gcgggcttgttaaggaaactgctgcatttattatttccgacgatctttgtgtgatgcctaatgattttggaacagttatacaactacttcaaaagctaga |
21194791 |
T |
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| Q |
176 |
aatctctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatactttcttattcaacttgcttctgaac----tgtattatct |
271 |
Q |
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| T |
21194792 |
aatatctgatattgacgctattacagaacaaactgttgatatcagcaagaaagaggcatgctttcttatgcaactctcttttaaactatatatataatct |
21194891 |
T |
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| Q |
272 |
atgccgttgattatttgtttttctcattaaatatttttactttt |
315 |
Q |
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| T |
21194892 |
atgctgttgatta-ttaattttctcattaaatatgtttactttt |
21194934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 24284461 - 24284617
Alignment:
| Q |
81 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctagaaatct |
180 |
Q |
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| T |
24284461 |
tttgctaaggaaaccgccacatttataatttctgatgatcttactgtgatgcctaatgtttttggaacagttataccactacttcaaaagcttgaaatca |
24284560 |
T |
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| Q |
181 |
ctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatact |
237 |
Q |
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| T |
24284561 |
caaacattggtgctattgttgaagaatctgttgaaatcagcaagcaagaggcatact |
24284617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 239
Target Start/End: Complemental strand, 24232279 - 24232121
Alignment:
| Q |
81 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaaaacctagaaatct |
180 |
Q |
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| T |
24232279 |
tttgtgaaggaaaatgctacttttatcatttctgatgatctttgtgttatgcctaatgtttttggagcaagtttaaatctacttcaaaagcttggagtcg |
24232180 |
T |
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| Q |
181 |
ctgatattggcgctattacggaacaaactgttgatatcagcaagaaagaggcatacttt |
239 |
Q |
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| T |
24232179 |
agactattgatgctattgaggaacaagctgttgacatcaacaagaaagaggcatgcttt |
24232121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 21194509 - 21194546
Alignment:
| Q |
10 |
agatgaagctgaatattgacgacacagaacccatgaaa |
47 |
Q |
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| T |
21194509 |
agatgaaactgaatatcgacgacacagaacccatgaaa |
21194546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 24154031 - 24153975
Alignment:
| Q |
81 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaat |
137 |
Q |
| |
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| T |
24154031 |
tttgttaaggaaactgcttcttttattattcgggacgatctttatgtgatgcctaat |
24153975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 3151496 - 3151577
Alignment:
| Q |
81 |
tttgttaaggaaactgctgcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactac |
162 |
Q |
| |
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|||||| | ||||||||| | ||||| ||||| || ||||||| ||| |||||||||||||| | ||||||| |||| |||| |
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| T |
3151496 |
tttgttgaagaaactgctacttttatcatttccgacgatctttttgtgatgcctaatgttttggcaacagttgtacatctac |
3151577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 10989190 - 10989258
Alignment:
| Q |
99 |
gcatttattatttcagatgatctttatgtaatgcctaatgtttttggaacagttatacaactacttcaa |
167 |
Q |
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| T |
10989190 |
gcattgatcatttctgatgagctttctattatgcctaatgttttcggaacaattatacatctacttcaa |
10989258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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