View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_67 (Length: 344)
Name: NF0412_high_67
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_67 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 36806507 - 36806812
Alignment:
| Q |
10 |
agacaaagatgtgttagtttatgaaaaacttccagaaaaaatttcataccatgaaacaatgaagatgagtaaatattgtatttgtccaagtgggtgggaa |
109 |
Q |
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| T |
36806507 |
agacaaagatgtgttagtttatgaaaaacttccagaaaaaatttcataccatgaaacaatgaagatgagtaaatattgtatttgtccaagtgggtgggaa |
36806606 |
T |
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| Q |
110 |
gtggcaagtccaagaattgttgaggctatttatgctgaatgtgtacctattataatatcacaacaatatgtactcccttttagtgatgttcttgactggg |
209 |
Q |
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| T |
36806607 |
gtggcaagtccaagaattgttgaggctatttatgctgaatgtgtacctattataatatcacaacaatatgtactcccttttagtgatgttcttgattggg |
36806706 |
T |
|
| Q |
210 |
attcattttctgttaagattgaagttagtgaaattcccaagcttaaggatattctgttgggtatatctgaggagaaatatatgaaattgcaagagggtgt |
309 |
Q |
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| T |
36806707 |
attcattttctgttaagattgaagttagtgaaattcccaagcttaaggatattctgttgggtatatctgaggagaaatatatgaaattgcaagagggtgt |
36806806 |
T |
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| Q |
310 |
taagca |
315 |
Q |
| |
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|||||| |
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| T |
36806807 |
taagca |
36806812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 315
Target Start/End: Complemental strand, 36514720 - 36514415
Alignment:
| Q |
10 |
agacaaagatgtgttagtttatgaaaaacttccagaaaaaatttcataccatgaaacaatgaagatgagtaaatattgtatttgtccaagtgggtgggaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36514720 |
agacaaagatgtgttagtttatgaaaaacttccagaaaaaatttcataccatgaaaccatgaagatgagtaaatattgtatttgtccaagtgggtgggaa |
36514621 |
T |
|
| Q |
110 |
gtggcaagtccaagaattgttgaggctatttatgctgaatgtgtacctattataatatcacaacaatatgtactcccttttagtgatgttcttgactggg |
209 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| | |||| |
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| T |
36514620 |
gtggcaagtccaagaattgttgaggcaatttatgctgaatgtgtacctattctaatatcacaacaatatgtacttccttttagtgatgttcttaattggg |
36514521 |
T |
|
| Q |
210 |
attcattttctgttaagattgaagttagtgaaattcccaagcttaaggatattctgttgggtatatctgaggagaaatatatgaaattgcaagagggtgt |
309 |
Q |
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|||| || |||||| | |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||| |
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| T |
36514520 |
attctttctctgttcaaattgaagttagtgaaattcccaagcttaaggaaattttgttgggtatttctgaggagaaatatatgagattgcaagagggtgt |
36514421 |
T |
|
| Q |
310 |
taagca |
315 |
Q |
| |
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|||||| |
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|
| T |
36514420 |
taagca |
36514415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 157
Target Start/End: Complemental strand, 47728025 - 47727945
Alignment:
| Q |
77 |
agtaaatattgtatttgtccaagtgggtgggaagtggcaagtccaagaattgttgaggctatttatgctgaatgtgtacct |
157 |
Q |
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||||||| |||| | ||||||||||| | |||||||| |||||||||||||| || || ||| |||||| ||||||||| |
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| T |
47728025 |
agtaaattttgtttgtgtccaagtggatatgaagtggctagtccaagaattgtggaagcaattaatgctgggtgtgtacct |
47727945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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