View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_70 (Length: 335)
Name: NF0412_high_70
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_70 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 324
Target Start/End: Original strand, 26784384 - 26784678
Alignment:
| Q |
30 |
ggtatctataggcatttaaagtactaggcaattcatttttaacctatagacaaattcataccatatagcaagaaaaccatctatgttaaaatgagaccaa |
129 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26784384 |
ggtatctataggcatttaaagtactgggcaattcatttttaacctatagacaaattcataccatatagcaagagaaccatctatgttaaaatgagaccaa |
26784483 |
T |
|
| Q |
130 |
tgtaatgtaacactcttgtcacattaaaatttagtaaaataccaggtaaagagatatgactaattttgaggttgaattaagaaaatggaacctgtatatt |
229 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
26784484 |
tgtaatttaacactcttgtcacattaaaatttggtaaaataccaggtaaagagatatgactaattttgagattgaattaagtaaatggaacctgtatatt |
26784583 |
T |
|
| Q |
230 |
ggagaggtataagaatttccatccttcgagacttgcacgtactgacagatccatatcttcaactgtggtcctatctttccacccaccagcttcat |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26784584 |
ggagaggtataagaatttccatccttcgagacttgcacgtactgatagatccatatcttcaactgtggtcctatctttccacccaccagcttcat |
26784678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 111 - 324
Target Start/End: Original strand, 26831168 - 26831382
Alignment:
| Q |
111 |
tatgttaaaatgagaccaatgtaatgtaacactcttgt---cacattaaaatttagtaaaataccaggtaaagagatatgactaattttgaggttgaatt |
207 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||| | ||||||||| ||| |||| || | | |||||||| ||||||||||||| |||||| |
|
|
| T |
26831168 |
tatgttaatatggaaccaatgtaatgtaacactcttcttctcacattaaattttggtaacatgtga--ttaagagataagactaattttgagaatgaatt |
26831265 |
T |
|
| Q |
208 |
aagaaaatggaacctgtatattggagaggtataagaatttccatccttcgagacttgcacgtactgacagatccatatcttcaactgtggtcctatcttt |
307 |
Q |
| |
|
|||||||| ||||||| | || |||||||||||||||||||||||||| |||||| |||||||| | || |||||| ||||| || ||||| |||||||| |
|
|
| T |
26831266 |
aagaaaatcgaacctgcaaatcggagaggtataagaatttccatcctttgagactggcacgtacagccaaatccatgtcttcgacggtggttctatcttt |
26831365 |
T |
|
| Q |
308 |
ccacccaccagcttcat |
324 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
26831366 |
ccacccaccagcttcat |
26831382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 26817621 - 26817711
Alignment:
| Q |
234 |
aggtataagaatttccatccttcgagacttgcacgtactgacagatccatatcttcaactgtggtcctatctttccacccaccagcttcat |
324 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26817621 |
aggtataagaatttccatccttccagactagcacgtacagccaggtccatatcttcaactgtggtcctatctttccacccaccagcttcat |
26817711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 205 - 324
Target Start/End: Original strand, 26790885 - 26791004
Alignment:
| Q |
205 |
attaagaaaatggaacctgtatattggagaggtataagaatttccatccttcgagacttgcacgtactgacagatccatatcttcaactgtggtcctatc |
304 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||| |||||||| | || |||||| ||||| || ||||| ||||| |
|
|
| T |
26790885 |
attaagaaaatggaacctgtaaattggagagatataggaatttccatcctttgagactagcacgtacagccaaatccatgtcttcgacggtggttctatc |
26790984 |
T |
|
| Q |
305 |
tttccacccaccagcttcat |
324 |
Q |
| |
|
|||||| ||||| ||||||| |
|
|
| T |
26790985 |
tttccatccacccgcttcat |
26791004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 26831105 - 26831170
Alignment:
| Q |
30 |
ggtatctataggcatttaaagtactaggcaattcatttttaacctatagacaaattcataccatat |
95 |
Q |
| |
|
|||| ||| |||| ||||| ||||| |||||||| |||||||||||||||| |||||| ||||||| |
|
|
| T |
26831105 |
ggtacctaaaggcttttaatgtacttggcaattcgtttttaacctatagaccaattcacaccatat |
26831170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 41919793 - 41919753
Alignment:
| Q |
279 |
tccatatcttcaactgtggtcctatctttccacccaccagc |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
41919793 |
tccatatcttcaactgtggtcctatccttccatccaccagc |
41919753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1799 times since January 2019
Visitors: 3091