View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_71 (Length: 334)
Name: NF0412_high_71
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_71 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 33039828 - 33039566
Alignment:
| Q |
23 |
atcatcaacacgtgttagacactaattagaaaatagaaaaagacattatcatcatgaatacttatcaaaactgagagtatctttaatggactctaactaa |
122 |
Q |
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| T |
33039828 |
atcatgaacacgtgttagacactaattagaaaatagaaaaagacattatcatcatgaatacttatcaaaactgagagtatctttagtggactctaactaa |
33039729 |
T |
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| Q |
123 |
acaacactaaccaaaatgtttattgtaaataattataaggcaagaatatatttaattgattaaaaaccaaccatgtcacagaatttaaaatttctaatac |
222 |
Q |
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| T |
33039728 |
acaacactaactaaaatgtttattggaaataattataaagcaagaatatatttaattgattaaaaaccaaccatgtcacagaatttaaaatttctaatac |
33039629 |
T |
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| Q |
223 |
tatctcagttgagagtgtaatcatacatcaccaaggtaatcatgtatttatttttctgcgttg |
285 |
Q |
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| T |
33039628 |
tatctcagttgagagtgtaatcatacatcaccaaggttatcatgtatttatttttctgcgttg |
33039566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 29 - 277
Target Start/End: Complemental strand, 39953615 - 39953356
Alignment:
| Q |
29 |
aacacgtgttagacactaattagaaaatagaaaaagacattatcatcatgaatacttatcaaaactgagagtatctttaatggactctaactaaacaaca |
128 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||| | |||||||||||||||||||| |
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| T |
39953615 |
aacacgtgttagacactaattagaacatagaaaaagacattataatcatgaatactcatcaaaactaagagtatctct-gtggactctaactaaacaaca |
39953517 |
T |
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| Q |
129 |
ctaaccaaaatgtttattgtaaataattataaggca----------agaatatatttaattgat--taaaaaccaaccatgtcacagaatttaaaatttc |
216 |
Q |
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| T |
39953516 |
ctaactaaaatgtttatggtaaataattataaagcaaggaagcatgagaatatatttaattgattataaaaaccaatttagtcacagaatttaaaatttc |
39953417 |
T |
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| Q |
217 |
taatactatctcagttgagagtgtaatcatacatcaccaaggtaatcatgtatttattttt |
277 |
Q |
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| T |
39953416 |
taatactatctcagttgagagtgtaatcatgcatcaccaatgttatcatgttttttttttt |
39953356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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