View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_75 (Length: 317)
Name: NF0412_high_75
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_75 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 33647374 - 33647670
Alignment:
| Q |
1 |
tatggtaggtgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctacc |
100 |
Q |
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| T |
33647374 |
tatggtagctgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtgtggctcagatagggctacc |
33647473 |
T |
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| Q |
101 |
gctcttcattgtgctgtttctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacg |
200 |
Q |
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| T |
33647474 |
gctcttcgttgtgctgtttctggttgttctgctgcttctgccgaggttgtcaaacttctgcttgatgcatctgcagatgttagttccgctgatgcatatc |
33647573 |
T |
|
| Q |
201 |
gtaaccggtgcagcgacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgt |
297 |
Q |
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| T |
33647574 |
gtaaccggtgcagcaacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaagggatactagaaggggtagatgatgt |
33647670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 25812193 - 25812488
Alignment:
| Q |
1 |
tatggtaggtgctttatatggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctacc |
100 |
Q |
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|||||| | ||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
25812193 |
tatggttgctgccttatttggaagcaagggtgtgttgtcttatattctcggaaccagtcgtgttgatgtcaaccgagtgtgcggctcagatagggctacc |
25812292 |
T |
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| Q |
101 |
gctcttcattgtgctgtttctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacg |
200 |
Q |
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| T |
25812293 |
gctcttcgttgtgctgtttctggatgttctgctgcttctgctgaagttatcaacctttcgcttgatgcatctgcagatgttagttccattgatgtgaatg |
25812392 |
T |
|
| Q |
201 |
gtaaccggtgcagcgacttggttgtctcggtttctaatagtctctacggttcaaggaagaggatactacaaggcatactagaaggggtagatgatgt |
297 |
Q |
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||| | ||||||||||||| |||||||||| |||| |||| | | ||||||||||||||||||||||| | |||||||||||| ||||||||||| |
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| T |
25812393 |
ataa-cagtgcagcgacttgattgtctcggtgtctagtagtatattcggttcaaggaagaggatactacgatccatactagaaggcgtagatgatgt |
25812488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 25817884 - 25818117
Alignment:
| Q |
19 |
tggaagcaagggtgtgttgtcttatattctcggaaccggtcgtgttgatgttaaccgagtgtatggctcagatagggctaccgctcttcattgtgctgtt |
118 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| | ||| ||||| |||| ||| |||||||||| | ||||| |
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| T |
25817884 |
tggaagcaagggtgtgttgtcttatattcttggaaccggtcgtgtcaatgttagccgaccttgtggttcagacaggggtacagctcttcatttttctgtt |
25817983 |
T |
|
| Q |
119 |
tctggttgttctgctgcttctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggtaaccggtgcagcgact |
218 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| |||||| |||||||||| |||| | ||||| || | ||| |||| | ||||| |
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| T |
25817984 |
actggttgttctgctgcttctgccgagattattaagcttttggttgatgcttctgcagatggtagtgttgttgatgagaatgacaactggtgtaacgact |
25818083 |
T |
|
| Q |
219 |
tggttgtctcggtttctaatagtctctacggttc |
252 |
Q |
| |
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|| |||||||||| ||||||||| ||| |||||| |
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| T |
25818084 |
tgattgtctcggtgtctaatagtatctccggttc |
25818117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 203
Target Start/End: Original strand, 30121843 - 30122007
Alignment:
| Q |
39 |
cttatattctcggaaccggtcgtgttgatgttaaccgagtgta-tggctcagatagggctaccgctcttcattgtgctgtttctggttgttctgctgctt |
137 |
Q |
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|||||||||| ||||| ||||| ||||||||||| || || || ||| || ||| | ||||| |||||||||||||| ||| ||| |||||||||||| |
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| T |
30121843 |
cttatattcttggaacaggtcgggttgatgttaatcg-gtctagtggatccgatggtgctactgctcttcattgtgcggttgttgggggttctgctgctt |
30121941 |
T |
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| Q |
138 |
ctgccgaggttgtcaagcttttgcttgatgtatctgcagatgttagttccgctgatgcaaacggta |
203 |
Q |
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| T |
30121942 |
cccccaagattatcaagattttgcttgatgcatcggcggatgctagtgctgttgatgccaacggta |
30122007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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