View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_high_78 (Length: 314)

Name: NF0412_high_78
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_high_78
NF0412_high_78
[»] chr2 (10 HSPs)
chr2 (57-208)||(6915171-6915322)
chr2 (68-124)||(10492777-10492833)
chr2 (67-119)||(28105350-28105402)
chr2 (61-124)||(10463585-10463648)
chr2 (61-108)||(10507349-10507396)
chr2 (73-124)||(10860707-10860758)
chr2 (62-124)||(10474161-10474223)
chr2 (68-124)||(7476566-7476622)
chr2 (73-124)||(10848803-10848854)
chr2 (67-124)||(7478731-7478788)
[»] chr4 (4 HSPs)
chr4 (216-314)||(3762512-3762610)
chr4 (222-314)||(3745722-3745814)
chr4 (222-314)||(3776599-3776691)
chr4 (222-314)||(3780912-3781004)
[»] chr7 (2 HSPs)
chr7 (57-128)||(15045570-15045641)
chr7 (155-208)||(15047553-15047606)
[»] chr8 (1 HSPs)
chr8 (72-123)||(44307022-44307073)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 57 - 208
Target Start/End: Complemental strand, 6915322 - 6915171
Alignment:
Q  57 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6915322 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccctcaaggtcagcagctgaaatgttctcatc 6915223  T
Q  157 atcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 208  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6915222 atcactaagaaacgcttcagcaagtacatcatctacctctgacacagtttct 6915171  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 10492777 - 10492833
Alignment:
Q  68 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||||| ||||||| ||||||  |||||||||| |||||||||||||||    
T  10492777 gcactacccatgaaaaccggtacaaatttatgtgctatggttgccctacgaattgct 10492833  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 28105402 - 28105350
Alignment:
Q  67 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaa 119  Q
    |||| ||||||||||||| |||||||| |||||||||||||| ||||||||||    
T  28105402 agcattacccatgaatactggtataaacttccgtgctatggtggccctacgaa 28105350  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 10463585 - 10463648
Alignment:
Q  61 tttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    ||||| ||||||||||||||| |  |||||||||||||||||||| || || ||||||||||||    
T  10463585 tttgaaagcactacccatgaaaaatggtataaatttccgtgctatcgtggctctacgaattgct 10463648  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 108
Target Start/End: Original strand, 10507349 - 10507396
Alignment:
Q  61 tttgacagcactacccatgaataccggtataaatttccgtgctatggt 108  Q
    ||||| |||||| ||||||||||| |||||||||||||||||||||||    
T  10507349 tttgaaagcactgcccatgaatacgggtataaatttccgtgctatggt 10507396  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 10860707 - 10860758
Alignment:
Q  73 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||| ||||    
T  10860707 acccatgaatactggtataaatttccgtgctatggtgaccctacgaactgct 10860758  T

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Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 10474161 - 10474223
Alignment:
Q  62 ttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||| |||||| ||||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  10474161 ttgaaagcactgcccatgaatattggtataaacttccgtgctatggtggccctacgaactgct 10474223  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 7476622 - 7476566
Alignment:
Q  68 gcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||||| ||||||| ||||||| ||||||| || |||||| ||||||||    
T  7476622 gcactacccatgaaaaccggtacaaatttctgtgctatagttgccctatgaattgct 7476566  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 124
Target Start/End: Original strand, 10848803 - 10848854
Alignment:
Q  73 acccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||||||||| |||||||||||  |||||||||| |||||||||| ||||    
T  10848803 acccatgaatactggtataaatttgtgtgctatggtggccctacgaactgct 10848854  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 7478788 - 7478731
Alignment:
Q  67 agcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgct 124  Q
    |||||| |||||||| |||||||||||||| |||||| |||| |||||| ||| ||||    
T  7478788 agcactgcccatgaagaccggtataaatttgcgtgctctggttgccctaagaactgct 7478731  T

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Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 3762512 - 3762610
Alignment:
Q  216 cactgtcaccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaag 314  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||| |||||||||| | |||||||||||||||||| ||||    
T  3762512 cactgccaccaacaacaggcatctccctaaccttattaagagctggattcctccccaagatagtaatagtactaccattatactttccttcaatgaaag 3762610  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 3745722 - 3745814
Alignment:
Q  222 caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaag 314  Q
    ||||||||| |||||| |||||||||||| ||||||| | ||| ||| |||| ||| |||||||||| | |||||||||||||||||| ||||    
T  3745722 caccaacaataggcatttccctaaccttattaagagcagaatttctccccaagatagtaatagtactcccattatactttccttcaatgaaag 3745814  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 3776599 - 3776691
Alignment:
Q  222 caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaag 314  Q
    |||||||||||||||| |||||||||||| || ||||  |||||||| |||| ||| |||| ||||| | |||||||||||||||||| ||||    
T  3776599 caccaacaacaggcatttccctaaccttattacgagcatgattcctccccaagatagtaatggtactaccattatactttccttcaatgaaag 3776691  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 314
Target Start/End: Original strand, 3780912 - 3781004
Alignment:
Q  222 caccaacaacaggcatatccctaaccttactaagagctggattcctcaccaaaatactaatagtacttctattatactttccttcaatcaaag 314  Q
    |||||||||||||||| |||||||||  | |||  || ||||||||| | |  ||| ||| |||||| | |||||||||||||||||| ||||    
T  3780912 caccaacaacaggcatctccctaaccaaattaatggcaggattcctccctacgatagtaagagtactaccattatactttccttcaatgaaag 3781004  T

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Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 15045570 - 15045641
Alignment:
Q  57 tgtttttgacagcactacccatgaataccggtataaatttccgtgctatggtagccctacgaattgctccct 128  Q
    ||||||||| ||||||||||||||||||||||||||||||||| || | ||||||||||||||| |||||||    
T  15045570 tgtttttgaaagcactacccatgaataccggtataaatttccgcgccacggtagccctacgaatggctccct 15045641  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 208
Target Start/End: Original strand, 15047553 - 15047606
Alignment:
Q  155 tcatcgctaagaaacgcttcagcaagtacatcatctacctctgacacaggttct 208  Q
    ||||| |||||||||||||| ||||||| |||||| ||||||||||||| ||||    
T  15047553 tcatcactaagaaacgcttccgcaagtatatcatcaacctctgacacagtttct 15047606  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 72 - 123
Target Start/End: Original strand, 44307022 - 44307073
Alignment:
Q  72 tacccatgaataccggtataaatttccgtgctatggtagccctacgaattgc 123  Q
    |||||||||| |  |||| |||||||||||||||||| ||||||||||||||    
T  44307022 tacccatgaaaattggtacaaatttccgtgctatggttgccctacgaattgc 44307073  T

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