View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_81 (Length: 309)
Name: NF0412_high_81
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_81 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 104; Significance: 7e-52; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 30503823 - 30503716
Alignment:
| Q |
192 |
cacaattatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatc |
291 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30503823 |
cacaattatggttatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatc |
30503724 |
T |
|
| Q |
292 |
tctctctg |
299 |
Q |
| |
|
|||||||| |
|
|
| T |
30503723 |
tctctctg |
30503716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 192 - 299
Target Start/End: Complemental strand, 30489114 - 30489007
Alignment:
| Q |
192 |
cacaattatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatc |
291 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30489114 |
cacaattatggttatcaggaccattgatatcagttacactcttaaattatggtatcaatattatttcacttatgtttgttggtcatcttggtgagttatc |
30489015 |
T |
|
| Q |
292 |
tctctctg |
299 |
Q |
| |
|
|||||||| |
|
|
| T |
30489014 |
tctctctg |
30489007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 197 - 299
Target Start/End: Complemental strand, 30514492 - 30514390
Alignment:
| Q |
197 |
ttatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatctctct |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
30514492 |
ttatggctatcagggccattgatatcagttacacttttaaattttggtatcaatcttatttcagttatgtttgttggtcatcttggtgagttacctctct |
30514393 |
T |
|
| Q |
297 |
ctg |
299 |
Q |
| |
|
||| |
|
|
| T |
30514392 |
ctg |
30514390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 24706351 - 24706453
Alignment:
| Q |
197 |
ttatggctatcaggaccattgatatcagttacactcttaaattttggtatcagtcttatttcacttatgtttgttggtcatcttagtgagttatctctct |
296 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || | |||||||||||||||| |||||||||| |||||||||||||||||||| |||||||| |||||| |
|
|
| T |
24706351 |
ttatggctatcagggccattgatatcagttgcatttttaaattttggtatcaatcttatttcagttatgtttgttggtcatcttggtgagttacctctct |
24706450 |
T |
|
| Q |
297 |
ctg |
299 |
Q |
| |
|
||| |
|
|
| T |
24706451 |
ctg |
24706453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 39 - 82
Target Start/End: Complemental strand, 30503974 - 30503931
Alignment:
| Q |
39 |
aagagacacatagaattcacctaaacaagaaagaaacactgaga |
82 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
30503974 |
aagagacacatagaattcaccaaaacaagaaagaaacacagaga |
30503931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1749 times since January 2019
Visitors: 3091