View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_high_88 (Length: 302)
Name: NF0412_high_88
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_88 |
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| [»] scaffold0055 (1 HSPs) |
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| [»] scaffold0052 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 73 - 242
Target Start/End: Original strand, 14989427 - 14989597
Alignment:
| Q |
73 |
aatatctctagtgctcggaattcgaaaggcgactctacatttcatatttagatcatcaacatattaatgtgaaggcttcttattccgcaacaaagaaagt |
172 |
Q |
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| T |
14989427 |
aatatctctagtgctcggaattcgaaaggcgactctacatttcatatttagatcatcaacatattaatgtgaaggcttcttattccgcaataaagaaagt |
14989526 |
T |
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| Q |
173 |
aatttttcagtctggctcgcactcggg-ttttatttggaaaataaaatgttccataccaatggatttgggt |
242 |
Q |
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| T |
14989527 |
aatttttcagtctggctcgcactcgggtttttacttggaaaataaaatgttccatactaatggatttgggt |
14989597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 127
Target Start/End: Original strand, 14982852 - 14982909
Alignment:
| Q |
70 |
agaaatatctctagtgctcggaattcgaaaggcgactctacatttcatatttagatca |
127 |
Q |
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| T |
14982852 |
agaaatatctctagtgctcggaattcaaaagatgactctacatttcatattaagatca |
14982909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0055 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0055
Description:
Target: scaffold0055; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 1092 - 1187
Alignment:
| Q |
143 |
gaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactcggg--ttttatttggaaaataaaatgttccataccaatggat |
236 |
Q |
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| T |
1092 |
gaaggcttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcggggttttcacttggaaaagaaaatattcgatactaatggat |
1187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0052 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0052
Description:
Target: scaffold0052; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 236
Target Start/End: Complemental strand, 83443 - 83348
Alignment:
| Q |
143 |
gaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactcggg--ttttatttggaaaataaaatgttccataccaatggat |
236 |
Q |
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| T |
83443 |
gaaggcttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcggggttttcacttggaaaagaaaatattcgatactaatggat |
83348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 2916747 - 2916843
Alignment:
| Q |
142 |
tgaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactcgg-gtttt-atttggaaaataaaatgttccataccaatggat |
236 |
Q |
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||||||||||||||||| |||||||||||| | ||||||||||| ||||| || ||| ||||| | |||||||| ||||| ||| |||| ||||||| |
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| T |
2916747 |
tgaaggcttcttattccacaacaaagaaagcactttttcagtctcgctcgtacgcggtgttttcacttggaaaagaaaatattcgatactaatggat |
2916843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 191
Target Start/End: Complemental strand, 7708476 - 7708427
Alignment:
| Q |
142 |
tgaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcg |
191 |
Q |
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| T |
7708476 |
tgaaggtttcttattccacaacaaagaaagcactttttcagtcttgctcg |
7708427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 18353083 - 18353178
Alignment:
| Q |
143 |
gaaggcttcttattccgcaacaaagaaagtaatttttcagtctggctcgcactcggg--ttttatttggaaaataaaatgttccataccaatggat |
236 |
Q |
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|||||||||||||||| |||||||||||| | ||||||||||| ||||| || |||| ||| | |||||||| ||||| ||| |||| ||||||| |
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| T |
18353083 |
gaaggcttcttattccacaacaaagaaagcactttttcagtcttgctcgtacgcggggttttcacttggaaaagaaaatattcgatactaatggat |
18353178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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