View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_high_99 (Length: 289)
Name: NF0412_high_99
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_high_99 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 24 - 282
Target Start/End: Complemental strand, 39335807 - 39335557
Alignment:
| Q |
24 |
tcatcagtaatggattttaacattgtattatatgatatttaatgtgatccatacaccaaaaaatgtcctgcaatacttggggatagagggcatacacaat |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39335807 |
tcatcagtaatggattttaacattgtattat-------ttaatgtgatccatacaccaaaaa-tgtcctgcaatacttggggatagagggcatacacaat |
39335716 |
T |
|
| Q |
124 |
tcccaaagtcgatactcttaatgagcaagcttgttataaatagtataaataaataaaacaatacaacggactttagttcggaacgtaatgttaaaaatga |
223 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39335715 |
tcccaaagtcgatactctttatgagcaagtttgttataaaaagtataaataaataaaacaatacaacggactttagttcggaacgtaatgttaaaaatga |
39335616 |
T |
|
| Q |
224 |
aaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcg |
282 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39335615 |
aaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcg |
39335557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 48 - 282
Target Start/End: Complemental strand, 39347050 - 39346815
Alignment:
| Q |
48 |
gtattatatgatatttaatgtgatccatacaccaaaaaatgtcctgcaatacttggggatagagggcatacacaattcccaaagtcgata--ctcttaat |
145 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||| |||||||| ||||| || |
|
|
| T |
39347050 |
gtattatatgatatttaatgtgatccatacaccaaaaa-tgccccgcatgacttggggatagagggcatacacaattcccacagtcgatattctcttgat |
39346952 |
T |
|
| Q |
146 |
gagcaagcttgttataaatagtataaataaataaaacaatacaacggactttagttcggaacgtaatgttaaaaatgaaaatgtctcatttccaaactta |
245 |
Q |
| |
|
|| |||||||| | || ||| | |||||||||||||||||||||| || || || || |||| |||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
39346951 |
gaacaagcttgctgtatatattttaaataaataaaacaatacaacagatttgaggtcagaacataatgttaaaaatggaaatttctcatttccaaactta |
39346852 |
T |
|
| Q |
246 |
cttggcaaagcttgaagatgtagacaaatgaattgcg |
282 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39346851 |
cttggcaaagctggaagatgtagacaaatgaattgcg |
39346815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 39361431 - 39361369
Alignment:
| Q |
217 |
aaaatgaaaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaatt |
279 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39361431 |
aaaatgaaaatgtctaatttccaaacttacttggcaaagcttgaagatgtagacaaatgaatt |
39361369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 283
Target Start/End: Original strand, 39566948 - 39567048
Alignment:
| Q |
182 |
caatacaacggactttagttcggaacgtaatgttaaaaatgaaaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgc |
281 |
Q |
| |
|
||||||||| ||||| || ||||||| |||||| ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39566948 |
caatacaaccgacttgaggtcggaacaaaatgtttaaa-tcaaaatgtaaaatttccaaacttacttggcaaagcttgaagatgtagacaaatgcattgc |
39567046 |
T |
|
| Q |
282 |
gt |
283 |
Q |
| |
|
|| |
|
|
| T |
39567047 |
gt |
39567048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 39540934 - 39540999
Alignment:
| Q |
217 |
aaaatgaaaatgtctcatttccaaacttacttggcaaagcttgaagatgtagacaaatgaattgcg |
282 |
Q |
| |
|
|||||||||||||| | |||||||| ||||||| ||| ||||||||| ||||||||||| ||||| |
|
|
| T |
39540934 |
aaaatgaaaatgtccaaattccaaacctacttggaaaatcttgaagatatagacaaatgagttgcg |
39540999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1917 times since January 2019
Visitors: 3094