View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_100 (Length: 334)
Name: NF0412_low_100
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_100 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 30 - 202
Target Start/End: Complemental strand, 41256653 - 41256481
Alignment:
| Q |
30 |
taaataactcatacctcatgctttaaacgcatgcgttcgtaacaatcaaacaattaccagtaattgtaataatcaagcgtctttaagtttttctataaaa |
129 |
Q |
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| T |
41256653 |
taaataactcatacctcatgctttaaacgcatgcgtacgtaacaatcaaacaattaccagtaattataataatcaagcgtctttaagtttttctataaaa |
41256554 |
T |
|
| Q |
130 |
atttactcatcataatgacacgagttaattatgtgaattttctttacatcgccgagaaaaaacaacttacata |
202 |
Q |
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| T |
41256553 |
atttactcatcataatgacacgagttaattatgtgaattttctttacatcgccgagaaaaaacaacttacata |
41256481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 201 - 326
Target Start/End: Complemental strand, 41256199 - 41256074
Alignment:
| Q |
201 |
tataaagtttgtttaatttcatgtttgacattactttagatttgttagaatcgcacgagtcgtcatgatatttataaatctacgacgatactaaacatac |
300 |
Q |
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||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
41256199 |
tataatgtttgtttaatttcatatttgacattactttaaatttgttagaatcgcacgagtcgtcatgatatttataaatctacgacgataccaaacatac |
41256100 |
T |
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| Q |
301 |
atcaagtcataatataaagtataatc |
326 |
Q |
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| T |
41256099 |
atcaagtcataatataaagtataatc |
41256074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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