View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_103 (Length: 326)

Name: NF0412_low_103
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_103
NF0412_low_103
[»] chr1 (3 HSPs)
chr1 (21-314)||(18793336-18793629)
chr1 (146-188)||(26016232-26016274)
chr1 (148-188)||(28528348-28528388)
[»] chr8 (3 HSPs)
chr8 (41-188)||(38328175-38328322)
chr8 (128-188)||(10824543-10824603)
chr8 (146-181)||(16351163-16351198)
[»] chr4 (3 HSPs)
chr4 (146-184)||(15183630-15183668)
chr4 (148-188)||(30807362-30807402)
chr4 (146-183)||(42037638-42037675)
[»] chr5 (2 HSPs)
chr5 (146-186)||(21952119-21952159)
chr5 (146-187)||(32516291-32516332)
[»] chr2 (4 HSPs)
chr2 (37-188)||(7292755-7292906)
chr2 (147-187)||(876858-876898)
chr2 (146-178)||(12904745-12904777)
chr2 (148-184)||(33594744-33594780)
[»] chr7 (1 HSPs)
chr7 (47-96)||(5335781-5335830)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 18793336 - 18793629
Alignment:
Q  21 acatcatcatttatgttacgcttactttatgtttgttctggttctttaccgcccaacactatatctcgtacaacactgtaggtcttgctgttgtttgata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18793336 acatcatcatttatgttacgcttactttatgtttgttctggttctttaccgcccaacactatatctcatacaacactgtaggtcttgctgttgtttgata 18793435  T
Q  121 aaattctccattcaacttaacttgcactttcgcatcacataaaacacctgagacactcctccatttcatccaacttattcgcaggtctacatcttctttt 220  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18793436 aaattctccattcaacttaacttgtactttcgcatcacataaaacacctgagacactcctccatttcatccaacttattcgcaggtctacatctcctttt 18793535  T
Q  221 aaactatgtaatttttggtatgatataattttcagcttttacatctaagttatgaacgtactgaatcaaagttcgaatccttccacaacatatt 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  18793536 aaactatgtaatttttggtatgatataattttcagcttttacatctaagttatgaacgtaatgaatcaaagttcgaatccttccacaacatatt 18793629  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 26016274 - 26016232
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactcctccatttca 188  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  26016274 actttagcatcacataaaacacctgagacactcctccatttca 26016232  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 28528388 - 28528348
Alignment:
Q  148 tttcgcatcacataaaacacctgagacactcctccatttca 188  Q
    ||||||||||||||||||||||||| |||||||| ||||||    
T  28528388 tttcgcatcacataaaacacctgaggcactcctcaatttca 28528348  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 38328175 - 38328322
Alignment:
Q  41 cttactttatgtttgttctggttctttaccgcccaacactatatctcgtacaacactgtaggtcttgctgttgtttgataaaattctccattcaacttaa 140  Q
    ||||||||||||||||  ||||||||||| ||||||| || ||||||||||| || ||| |||||| |||||||| |||||| || ||| ||||||||||    
T  38328175 cttactttatgtttgtgttggttctttactgcccaactctctatctcgtacaccattgttggtcttactgttgttcgataaatttttcccttcaacttaa 38328274  T
Q  141 cttgcactttcgcatcacataaaacacctgagacactcctccatttca 188  Q
       | | ||||  |||||||||||||||| |||||||||| |||||||    
T  38328275 acggtattttcatatcacataaaacacctaagacactccttcatttca 38328322  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 128 - 188
Target Start/End: Original strand, 10824543 - 10824603
Alignment:
Q  128 ccattcaacttaacttgcactttcgcatcacataaaacacctgagacactcctccatttca 188  Q
    ||||||||||||||| | | ||||| ||||||||||||||||||||| || ||||||||||    
T  10824543 ccattcaacttaactggtattttcgtatcacataaaacacctgagactcttctccatttca 10824603  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 181
Target Start/End: Complemental strand, 16351198 - 16351163
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactcctc 181  Q
    |||||| |||||||||||||||||||||||||||||    
T  16351198 actttcacatcacataaaacacctgagacactcctc 16351163  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 15183668 - 15183630
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactcctccat 184  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  15183668 actttcgcatcacataaaacacttgagacactcctccat 15183630  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 188
Target Start/End: Complemental strand, 30807402 - 30807362
Alignment:
Q  148 tttcgcatcacataaaacacctgagacactcctccatttca 188  Q
    |||| ||||||||||||||||| ||||||||||||||||||    
T  30807402 tttcacatcacataaaacacctaagacactcctccatttca 30807362  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 42037675 - 42037638
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactcctcca 183  Q
    |||||| |||||||||||||||||||| ||||||||||    
T  42037675 actttcacatcacataaaacacctgaggcactcctcca 42037638  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 21952159 - 21952119
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactcctccattt 186  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  21952159 actttcgcatcacataaaacacatgaggcactcctccattt 21952119  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 32516291 - 32516332
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactcctccatttc 187  Q
    ||||| ||||||||||||||||||||| |||| |||||||||    
T  32516291 acttttgcatcacataaaacacctgaggcacttctccatttc 32516332  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 188
Target Start/End: Complemental strand, 7292906 - 7292755
Alignment:
Q  37 tacgcttactttatgtttgttctggttctttaccgcccaacactatatctcgtacaacactgtaggtcttgctgttgtttgataaaattctccattcaac 136  Q
    |||||||| ||||||||  |  |||||||| ||| ||||||||  | || ||||||||| ||| |||||| | |||||   || ||||| ||  ||||||    
T  7292906 tacgcttattttatgttcatgttggttcttcaccacccaacaccttgtcccgtacaacattgtcggtcttaccgttgtcatatgaaattttctcttcaac 7292807  T
Q  137 ttaacttgcactttcgcatcacataaaacacctgagacactcctccatttca 188  Q
    || |   | |||||||||||| |||||||||||||| ||||||| |||||||    
T  7292806 ttgagcagtactttcgcatcatataaaacacctgagtcactccttcatttca 7292755  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 187
Target Start/End: Complemental strand, 876898 - 876858
Alignment:
Q  147 ctttcgcatcacataaaacacctgagacactcctccatttc 187  Q
    |||||||||||||| |||| |||||| ||||||||||||||    
T  876898 ctttcgcatcacattaaacgcctgaggcactcctccatttc 876858  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 12904777 - 12904745
Alignment:
Q  146 actttcgcatcacataaaacacctgagacactc 178  Q
    |||||||||||| ||||||||||||||||||||    
T  12904777 actttcgcatcatataaaacacctgagacactc 12904745  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 33594744 - 33594780
Alignment:
Q  148 tttcgcatcacataaaacacctgagacactcctccat 184  Q
    ||||||||||| |||||||||| ||||||||||||||    
T  33594744 tttcgcatcacttaaaacacctaagacactcctccat 33594780  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 5335830 - 5335781
Alignment:
Q  47 ttatgtttgttctggttctttaccgcccaacactatatctcgtacaacac 96  Q
    |||||||||| |  |||||||||||||||||||| | |||||||||||||    
T  5335830 ttatgtttgtgcccgttctttaccgcccaacactctgtctcgtacaacac 5335781  T

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