View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_106 (Length: 321)
Name: NF0412_low_106
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 47419515 - 47419335
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
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| T |
47419515 |
gagatgaaatgcccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47419416 |
T |
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| Q |
180 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
260 |
Q |
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| T |
47419415 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
47419335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 80 - 260
Target Start/End: Complemental strand, 47391152 - 47390972
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
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| T |
47391152 |
gagatgaaatacctaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattaacaaaagtgcaacaacaggtagg |
47391053 |
T |
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| Q |
180 |
tagaatagatgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttcttgtagacaaa |
260 |
Q |
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| T |
47391052 |
cagaatagatgatttttcctaaggtggttagagatagatttcaacgttatgctaagaaccatcctttttattgcagacaaa |
47390972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 80 - 251
Target Start/End: Complemental strand, 47421987 - 47421796
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47421987 |
gagatgaaataccgaaagaacattttgtacggcttatgaaagggattgtgggggatccgatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
47421888 |
T |
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| Q |
180 |
tagaatag--------------------atgttttttcttaaggtggttagagataggtttcaacgttatgctaagaaccgtcctttttctt |
251 |
Q |
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|||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| |
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| T |
47421887 |
tagaatagatagtttactttatcttacaatgtgttttcttaaggtggttaaagatagatttcaacgttatgctaagaaccatcctttttctt |
47421796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 47408286 - 47408183
Alignment:
| Q |
80 |
gagatgaaatacccaaagaacattttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtagg |
179 |
Q |
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||||||||||| ||||||| || | |||| ||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||| ||||||||||| |
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| T |
47408286 |
gagatgaaatatccaaagatcagtgtgtaaggcttttgaaagggattgtggaggatcagatgattaggaaagcattaacagaagtgcagcaacaggtagg |
47408187 |
T |
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| Q |
180 |
taga |
183 |
Q |
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|||| |
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| T |
47408186 |
taga |
47408183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 190
Target Start/End: Complemental strand, 47424696 - 47424609
Alignment:
| Q |
103 |
tttgtacggcttatgaaagggattgtgggggatcagatgcttaggatagcattagcaaaagtgcaacaacaggtaggtagaatagatg |
190 |
Q |
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|||||||||||||||||||| ||||||||| | |||||||||| | ||||| || ||||||| ||||||||| ||||| |||||| |
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| T |
47424696 |
tttgtacggcttatgaaaggcattgtggggaagcagatgcttatatcaacattaacagaagtgcaccaacaggtacgtagattagatg |
47424609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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