View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_11 (Length: 493)
Name: NF0412_low_11
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_11 |
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| [»] scaffold0522 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 96 - 356
Target Start/End: Complemental strand, 37138360 - 37138114
Alignment:
| Q |
96 |
aaattgactacggataaaaatttaatgtcattatattatccaacccatatgagcattactaatctctaccattaaatattctaactattacatcatatgg |
195 |
Q |
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| T |
37138360 |
aaattgactacggataaaaatttaatgtcattatattatccaacccatatgagcattactaatctctaccattaaatattctaactattacatcatatgg |
37138261 |
T |
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| Q |
196 |
ttctaccatctacttcactaggaatattcgttttgtaatcattacaaaacaaaacnnnnnnnnnnngtctttgagctcaaattaacatatgccaggcatg |
295 |
Q |
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| T |
37138260 |
ttctaccatctacttcactacgaatattcgttttgtaatcattacaaaacacaa--------------ctttgagctcaaattaacatatgcctggcatg |
37138175 |
T |
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| Q |
296 |
ttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgccttcatcag |
356 |
Q |
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| T |
37138174 |
ttgttccaatttgatccaagagtccaagcaaattcttgattggtgggaccgctttcatcag |
37138114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 414 - 485
Target Start/End: Original strand, 2665080 - 2665151
Alignment:
| Q |
414 |
cctattacgcctgtagttgttactcctcctgcccctgttacgctttccccaattatcccccttgtctctgct |
485 |
Q |
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| T |
2665080 |
cctattacgcctgtagttgttactcctccttcccctgttacgctttccccaattatcccccttgtccctgct |
2665151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 414 - 467
Target Start/End: Original strand, 2664924 - 2664977
Alignment:
| Q |
414 |
cctattacgcctgtagttgttactcctcctgcccctgttacgctttccccaatt |
467 |
Q |
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| T |
2664924 |
cctattacgcctgtcgttgttactcctcctgcccctgttacggttcccccaatt |
2664977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 467
Target Start/End: Complemental strand, 727 - 690
Alignment:
| Q |
430 |
ttgttactcctcctgcccctgttacgctttccccaatt |
467 |
Q |
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| T |
727 |
ttgttacgcctcctgcccctgttacgcttcccccaatt |
690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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