View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0412_low_117 (Length: 316)

Name: NF0412_low_117
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0412_low_117
NF0412_low_117
[»] chr3 (6 HSPs)
chr3 (28-235)||(48838566-48838773)
chr3 (153-235)||(38044108-38044193)
chr3 (158-235)||(50904640-50904722)
chr3 (28-80)||(50904860-50904912)
chr3 (26-78)||(50911939-50911991)
chr3 (28-80)||(55084806-55084858)
[»] chr5 (1 HSPs)
chr5 (28-78)||(1754311-1754361)
[»] chr4 (7 HSPs)
chr4 (28-82)||(27424580-27424634)
chr4 (26-80)||(27502875-27502929)
chr4 (28-82)||(27505768-27505822)
chr4 (28-82)||(27523469-27523523)
chr4 (28-82)||(27526178-27526232)
chr4 (28-81)||(27476707-27476760)
chr4 (34-82)||(27414370-27414418)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 28 - 235
Target Start/End: Complemental strand, 48838773 - 48838566
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaatgggtggcctcacaattccttgcacataaaatcgttttttcttatt 127  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||     
T  48838773 atgaagcggtttgtgattcccgtgtcctacctgaaccaatcttcatttcaagaatgggtggcctcacaattccttgcacataaaattgtttttgcttata 48838674  T
Q  128 acttactgggctgtaaatgcagcttactggcatagattagtagtgacattttgaataataagcatttttacactagtaaatatttttcctattcccttta 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48838673 acttactgggctgtaaatgcagcttactggcatagattagtagtgacattttgaataataagcatttttacactagtaaatatttttcttattcccttta 48838574  T
Q  228 ttgggaaa 235  Q
    ||||||||    
T  48838573 ttgggaaa 48838566  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 38044108 - 38044193
Alignment:
Q  153 actggcatagattagtagtgacattttgaataataagcattttt---acactagtaaatatttttcctattccctttattgggaaa 235  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||   ||||| ||||||||||||||| |||||||||||||||||    
T  38044108 actgacatagattagtcgtgacattttgaacaataggcattttttttacacttgtaaatatttttccttttccctttattgggaaa 38044193  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 50904722 - 50904640
Alignment:
Q  158 catagattagtagtgacattttgaataataagc-----atttttacactagtaaatatttttcctattccctttattgggaaa 235  Q
    ||||||||||||||||||||||||| |||| ||      |||||||||| ||||||||||||||| ||||| | |||||||||    
T  50904722 catagattagtagtgacattttgaacaataggcgttttttttttacacttgtaaatatttttccttttcccgtgattgggaaa 50904640  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 50904912 - 50904860
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 80  Q
    ||||||||||||||||| |   ||||||||||||||||| |||||||||||||    
T  50904912 atgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaaga 50904860  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 50911991 - 50911939
Alignment:
Q  26 agatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 78  Q
    ||||||| ||||||||||| |||  ||| |||||||||||| |||||||||||    
T  50911991 agatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaa 50911939  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 55084806 - 55084858
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 80  Q
    ||||||||||||||||| ||  |||| |||||||||||| | |||||||||||    
T  55084806 atgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaaga 55084858  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 1754361 - 1754311
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaa 78  Q
    ||||||||||||||||| ||||| || |||||||||||||| |||||||||    
T  1754361 atgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaa 1754311  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 27424634 - 27424580
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 82  Q
    |||| ||||||||||||||| || || |||||||||||| |||||||||||||||    
T  27424634 atgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaat 27424580  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 27502929 - 27502875
Alignment:
Q  26 agatgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaaga 80  Q
    ||||||||||||||||||||||  |||| || ||||| ||| |||||||||||||    
T  27502929 agatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaaga 27502875  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 27505822 - 27505768
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 82  Q
    |||||||||||||||||||| || || |||||||||||| | ||||| |||||||    
T  27505822 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaat 27505768  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 27523523 - 27523469
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 82  Q
    |||||||||||||||||||| || || || ||||||||| ||||||| |||||||    
T  27523523 atgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaat 27523469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 27526232 - 27526178
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 82  Q
    |||||||||||||||||||| || || |||||||||||| | ||||| |||||||    
T  27526232 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaat 27526178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 27476707 - 27476760
Alignment:
Q  28 atgaagcggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaa 81  Q
    |||||||||||||||||||| || || |||||||||||| | ||||| ||||||    
T  27476707 atgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaa 27476760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 27414418 - 27414370
Alignment:
Q  34 cggtttgtgattcccgtgtcctacttgaaccaatcttcatttcaagaat 82  Q
    |||||||||||||| || || |||||||||||| | |||||||||||||    
T  27414418 cggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaat 27414370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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