View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_120 (Length: 313)
Name: NF0412_low_120
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_120 |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 11445554 - 11445741
Alignment:
| Q |
27 |
tcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggc |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
11445554 |
tcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagc |
11445653 |
T |
|
| Q |
127 |
taattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11445654 |
taattcagtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
11445741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 11547536 - 11547349
Alignment:
| Q |
27 |
tcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggc |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| || |
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| T |
11547536 |
tcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaggcgcaagagacgatacaggacactaactttcgaaggatggagtttcaaagatgaagc |
11547437 |
T |
|
| Q |
127 |
taattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11547436 |
taattcagtaagagtcattggttttccatggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
11547349 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 11507305 - 11507118
Alignment:
| Q |
27 |
tcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggc |
126 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
11507305 |
tcatcagtgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagc |
11507206 |
T |
|
| Q |
127 |
taattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
214 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
11507205 |
taattcagtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaattt |
11507118 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 11468533 - 11468710
Alignment:
| Q |
34 |
tgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattca |
133 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||| | ||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
11468533 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
11468632 |
T |
|
| Q |
134 |
gtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
211 |
Q |
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| || |||||| || ||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
11468633 |
ggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaa |
11468710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 11522928 - 11522751
Alignment:
| Q |
34 |
tgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattca |
133 |
Q |
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|||||||||||| |||||||||| |||||||||||||||||||| | ||| |||||||||||||| |||||||| |||||||||||||||||||||||| |
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| T |
11522928 |
tgttgtttttgcgaagaaaccatcgtgtgttagcaagcgcaagaacctatataggacactaactttagaagggtgaagtttcaaagatgaggctaattca |
11522829 |
T |
|
| Q |
134 |
gtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
211 |
Q |
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| || |||||| || ||||| || |||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
11522828 |
ggaacagtcataggctttccatgtttgtggattgcatctactattcctagttccacagcagatttgagtgccatggaa |
11522751 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 34 - 211
Target Start/End: Complemental strand, 34784110 - 34783933
Alignment:
| Q |
34 |
tgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattca |
133 |
Q |
| |
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||||||||||| |||||| ||||||||||||| | ||| |||| ||||| |||| ||||||| |||||||||||||| |||||||||||||||||| |
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| T |
34784110 |
tgttgtttttgtaaagaagccattgtgtgttaaaaggcgtaagaatcgatagaggatgttaactttagaagggtggagttttaaagatgaggctaattca |
34784011 |
T |
|
| Q |
134 |
gtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
211 |
Q |
| |
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| |||||||||||||||||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
34784010 |
gaaagagtcattggttttccatggttatggattgcatcagctatgcctagttccatggctgatttgagtgccatggaa |
34783933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 34775887 - 34775712
Alignment:
| Q |
36 |
ttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggctaattcagt |
135 |
Q |
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|
|||||||||||||||||||||| ||||||| | ||| |||| || | ||| | | ||||||| |||||||| ||||||||||||||||||| ||||| |
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|
| T |
34775887 |
ttgtttttgcaaagaaaccattatgtgttaaaaggcgtaagaatcggtgaagtatattaactttagaagggtgaagtttcaaagatgaggctagttcaga |
34775788 |
T |
|
| Q |
136 |
aagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaa |
211 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||||||||| || |||||||| ||||||||| |
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| T |
34775787 |
aagagtcattggttttccatggttgtgaattgcatcagctatgcctagttccatggctgatttgagagccatggaa |
34775712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 1962 - 1775
Alignment:
| Q |
27 |
tcatcagtgttgtttttgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttcgaagggtggagtttcaaagatgaggc |
126 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
1962 |
tcatcagtgttgttttcgcaaagaaaccattgtgtgttagcaagcgcaagagacgataaaggacactaactttagaagggtggagtttcaaagatgaagc |
1863 |
T |
|
| Q |
127 |
taattcagtaagagtcattggttttccctggttgtggattgcatcagctatgcctagttccacagcagatttgagtgccatggaattt |
214 |
Q |
| |
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||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||||| |
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| T |
1862 |
taattcagtaagagtcattggttttccatggttttggattgcatctgctatgcctagttccacggctgatttgagtgccatggaattt |
1775 |
T |
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