View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_128 (Length: 308)
Name: NF0412_low_128
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_128 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 71 - 239
Target Start/End: Original strand, 37993637 - 37993805
Alignment:
| Q |
71 |
atcatcaacaatgaagtttccctcatgcatattacttctcctcctaatactaaccacacatcttttcattccttcactctcagaacaatgcaatccacat |
170 |
Q |
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| T |
37993637 |
atcatcaacaatgaagtttccctcatgcatattacttctcctcctaatcctaaccacacatcttttcattccttcactctcagaacaatgcaatccacat |
37993736 |
T |
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| Q |
171 |
gacnnnnnnnccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcgtgggattca |
239 |
Q |
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| T |
37993737 |
gacaaaaaaaccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcatgggattca |
37993805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 38013166 - 38013329
Alignment:
| Q |
73 |
catcaacaatgaagtttccctcatgcatattacttctcctcctaatactaaccacacatcttttcattccttcactctcagaacaatgcaatccacatga |
172 |
Q |
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| T |
38013166 |
catcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcattccttcacactcagaaaactgcaacccagatga |
38013265 |
T |
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| Q |
173 |
cnnnnnnnccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcgtgggat |
236 |
Q |
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| T |
38013266 |
caaaagaaccctactccaaatcaaaaaagaatttggcaaccctagccaactctcttcatgggat |
38013329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 236
Target Start/End: Complemental strand, 37697799 - 37697752
Alignment:
| Q |
189 |
caaatcaaaaaacaatttggcaacccaaccaaactctcttcgtgggat |
236 |
Q |
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| T |
37697799 |
caaatcaaaaaagaatttggcaacccaaccaaactctcttcatgggat |
37697752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 37989449 - 37989612
Alignment:
| Q |
73 |
catcaacaatgaagtttccctcatgcatattacttctcctcctaatactaaccacacatcttttcattccttcactctcagaacaatgcaatccacatga |
172 |
Q |
| |
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||||||| ||||| || |||||||||||| ||||| ||| |||| ||||||||| ||| ||||||| ||||| ||||||| | ||||| ||| |||| |
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| T |
37989449 |
catcaaccatgaacttcacctcatgcatataccttctactcataatcctaaccacaaatcacttcattctttcacactcagaaaactgcaacccagatga |
37989548 |
T |
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| Q |
173 |
cnnnnnnnccctctttcaaatcaaaaaacaatttggcaacccaaccaaactctcttcgtgggat |
236 |
Q |
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| T |
37989549 |
caaaagaaccctactccaaataaagaaagaatttggcaaccctagccaactctcttcatgggat |
37989612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 25326075 - 25326116
Alignment:
| Q |
90 |
ccctcatgcatattacttctcctcctaatactaaccacacat |
131 |
Q |
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| T |
25326075 |
ccctcatgcatattccttctcctcctaaccctaaccacacat |
25326116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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