View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0412_low_131 (Length: 306)
Name: NF0412_low_131
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_131 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 7e-86; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 31 - 278
Target Start/End: Complemental strand, 22352786 - 22352544
Alignment:
| Q |
31 |
aaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtct-gtagagctaattgaagagctaggaaagctaaatcagctaaggga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22352786 |
aaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagagttgtagagctaattgaagagctaggaaagctaaatcagctaaggga |
22352687 |
T |
|
| Q |
130 |
gttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactaagtattaaaggaatcgga |
229 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||| |
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|
| T |
22352686 |
gttggtcttgtacggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactatatattattggagtcg-- |
22352589 |
T |
|
| Q |
230 |
atggaatatgacacattcattgatcttgatttgaattcacccccaccta |
278 |
Q |
| |
|
|| | |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22352588 |
-tg---ccttacacattcattgatctggatttgaattcacccccaccta |
22352544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 22366902 - 22366654
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtct-gtagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||| ||| ||||||||| |||| |||||||||||||| | ||| | |||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
22366902 |
acaaactctaaatgaggtttatttatatgatcatgaagatgaaaatgataatagagtcgtagagctaattgaagagctaggaaaactaaagcagctaagg |
22366803 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactaagtattaaaggaatcg |
227 |
Q |
| |
|
|| |||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||| || |||||||||||| ||||| ||| || |
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|
| T |
22366802 |
gaattgggcttggccggtgttaggagtaaatatatgagtgctatatcttcttcaatcaataagatgcaacaactggagaaactaaatattagtggagtc- |
22366704 |
T |
|
| Q |
228 |
gaatggaatatgacacattcattgatcttgatttgaattcacccccacctatgct |
282 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22366703 |
-----gaatatgagacattcattgatctggatttgaattcacccccacctatgct |
22366654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 29 - 282
Target Start/End: Complemental strand, 22356968 - 22356708
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtct-gtagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||| | ||||||||||||||| |||||||||||||| | ||| | |||||| |||| |||||||| ||||| ||||| ||||| ||| |
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|
| T |
22356968 |
acaaactctaaatagtgtttatttagatgattatgaagatgaaaatgataatagagttgtagagttaatagaagagctgggaaaactaaagcagcttagg |
22356869 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactaagtattaaa------g |
221 |
Q |
| |
|
|| ||| |||| |||| ||| ||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||| | |
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|
| T |
22356868 |
gaattgagcttgagcggtcttaagagtaaatatatgagtggtatatcttcctcaatcaatgagatgcaaaaattggagaaactaagtattaaaggagtcg |
22356769 |
T |
|
| Q |
222 |
gaatcggaatggaatatgacacattcattgatcttgatttgaattcacccccacctatgct |
282 |
Q |
| |
|
|||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22356768 |
gaatcggaatgggatatggcgcattcattgatcttgatttgaattcacccccacctatgct |
22356708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 29 - 278
Target Start/End: Complemental strand, 22629421 - 22629177
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtctg-tagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||| | ||||| ||||||||| |||||||||||||| | ||| || |||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
22629421 |
acaaactctaaatagtgtttgtttagatgataaggaagatgaaaatgataatagagtggtagagctaatcgaagatctaggaaagctaaatcagctaagg |
22629322 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactaagtattaaaggaatcg |
227 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |||| ||| || |
|
|
| T |
22629321 |
gaattggtcttgctcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaataagatgcaacaattggagaaactacaaattagtggagtc- |
22629223 |
T |
|
| Q |
228 |
gaatggaatatgacacattcattgatcttgatttgaattcacccccaccta |
278 |
Q |
| |
|
|||||||||||||||||||||| |||| ||| ||||||||||||| |
|
|
| T |
22629222 |
-----caatatgacacattcattgatctggattagaagtcacccccaccta |
22629177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 29 - 276
Target Start/End: Complemental strand, 22634436 - 22634194
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtctg-tagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||| ||| ||||||||||| || | ||||||||| |||| | ||| || ||||| |||| |||||||||||||||||||| ||||| ||| |
|
|
| T |
22634436 |
acaaactctaaatgaggtttatttagacgatgatgaagatgaagatgataatagagtggtagagttaatagaagagctaggaaagctaaagcagcttagg |
22634337 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaactaagtattaaaggaatcg |
227 |
Q |
| |
|
|| || |||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||| |
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|
| T |
22634336 |
gaattaagcttggtcggtgttaggagtaaatatatgagtgctatatcttcctcaatcaacaagatgcaacaattggagaaactaaatattagaggaatca |
22634237 |
T |
|
| Q |
228 |
gaatggaatatgacacattcattgatcttgatttgaattcacccccacc |
276 |
Q |
| |
|
| |||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
22634236 |
g------atataacacattcattgatatggatttgaattcacccccacc |
22634194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 85 - 278
Target Start/End: Complemental strand, 22441666 - 22441476
Alignment:
| Q |
85 |
tgtagagctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatc |
184 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||| | |||| |||| |||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
22441666 |
tgtagagctaatccaagagctaggaaagctaaaacagctaaggaaattgggcttgaccggtgttaggagtaaatatatgagtgctatatctttctcaatc |
22441567 |
T |
|
| Q |
185 |
aatcagatgcaaaaattggagaaactaagtattaaaggaatcggaatggaatatgacacattcattgatcttgatttgaattcacccccaccta |
278 |
Q |
| |
|
|| |||||||| ||||||||||||||| ||||| ||| || ||| | || |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22441566 |
aacgagatgcaacaattggagaaactaattattagtggagtc-caatctacta--acacattcattgatctggatttgaattcacccccaccta |
22441476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 29 - 211
Target Start/End: Complemental strand, 22466926 - 22466743
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtct-gtagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||| | ||| | |||||||||||| |||||||||||||||||||| || |||| |
|
|
| T |
22466926 |
acaaactctaagtgaagtttatttagatgagaatgaagatgaaaatgataatagagtagtagagctaattcaagagctaggaaagctaaataagataaga |
22466827 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaattggagaaacta |
211 |
Q |
| |
|
| ||| |||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| || ||||||||||| |
|
|
| T |
22466826 |
aaattgagcttgataggtgttaggagtaaatatatgagtgctatatcttcctcaatcaatcaaatgcaacaaatggagaaacta |
22466743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 22430119 - 22430001
Alignment:
| Q |
100 |
agagctaggaaagctaaatcagctaagggagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgcaaaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| || |
|
|
| T |
22430119 |
agagctaggaaagctaaatcagctaagggaattgggcttggccggtgtttggagtaaatatatgagtgctttatgttcctcaatcaatcagatgcacgaa |
22430020 |
T |
|
| Q |
200 |
ttggagaaactaagtatta |
218 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
22430019 |
ttggagaaactaaatatta |
22430001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 22457426 - 22457305
Alignment:
| Q |
90 |
agctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatca |
189 |
Q |
| |
|
||||||| ||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||| | |
|
|
| T |
22457426 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatga |
22457327 |
T |
|
| Q |
190 |
gatgcaaaaattggagaaacta |
211 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
22457326 |
gatgcaaaaagtggagaaacta |
22457305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 90 - 211
Target Start/End: Complemental strand, 22480407 - 22480286
Alignment:
| Q |
90 |
agctaattgaagagctaggaaagctaaatcagctaagggagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatca |
189 |
Q |
| |
|
||||||| ||||||||||||| ||||| || |||||||| ||||||||| ||||||||||||| ||| ||||||||| ||||||||||||||||| | |
|
|
| T |
22480407 |
agctaatccaagagctaggaaaactaaagcacctaagggaattggtcttgatcggtgttaggagcggatacatgagtgctatatcttcctcaatcaatga |
22480308 |
T |
|
| Q |
190 |
gatgcaaaaattggagaaacta |
211 |
Q |
| |
|
|||||||||| ||||||||||| |
|
|
| T |
22480307 |
gatgcaaaaagtggagaaacta |
22480286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 195
Target Start/End: Complemental strand, 22435609 - 22435442
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtct-gtagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||||| | ||| | |||||||| || |||||||||||||| | ||| | ||||||||||| ||||||||||||||||| ||||| ||| |
|
|
| T |
22435609 |
acaaactctaagtaaagttaaattagatgatggtgaagatgaaaatgataatagggtagtagagctaatcatagagctaggaaagctaacacagcttagg |
22435510 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatatgagtgctctatcttcctcaatcaatcagatgca |
195 |
Q |
| |
|
|| |||| |||| | | |||||| ||||||||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
22435509 |
gaattgggcttggttgttgttagtggtaaatatatgagtgctatatcttcctcaatcaataagatgca |
22435442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 37929734 - 37929600
Alignment:
| Q |
29 |
acaaactctaagtgatgtttatttagatgaaggagaagatgaaaatgacagtagtct-gtagagctaattgaagagctaggaaagctaaatcagctaagg |
127 |
Q |
| |
|
||||||||||| ||| || ||||||||||| | |||||||||||||| | ||| | ||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
37929734 |
acaaactctaaatgaagtatatttagatgatgatgaagatgaaaatgataatagagttgtagagctaatccaagagctaggaaagctaaaacagctaagg |
37929635 |
T |
|
| Q |
128 |
gagttggtcttgctcggtgttaggagtaaatatat |
162 |
Q |
| |
|
|| |||| |||| ||||||||||||||||||||| |
|
|
| T |
37929634 |
gaattgggcttggccggtgttaggagtaaatatat |
37929600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 278
Target Start/End: Complemental strand, 22435398 - 22435365
Alignment:
| Q |
245 |
ttcattgatcttgatttgaattcacccccaccta |
278 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| |
|
|
| T |
22435398 |
ttcattgatctggatttgaattcacccccaccta |
22435365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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