View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0412_low_137 (Length: 302)
Name: NF0412_low_137
Description: NF0412
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0412_low_137 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 25062679 - 25062509
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
157 |
Q |
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| T |
25062679 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
25062580 |
T |
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| Q |
158 |
acctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatg |
228 |
Q |
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| T |
25062579 |
acctaaactataatgtttcaaatttgtttatccgtaatttaattaggtggtttgattatttcttagtgatg |
25062509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 25071382 - 25071212
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
157 |
Q |
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| T |
25071382 |
gtgagatgaaaatcaaggccattgatacgtggtctgcaattcaaaaaagagatgattggagagatttttgtttcatgtaagtatggtcgcatttgtatgc |
25071283 |
T |
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| Q |
158 |
acctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatg |
228 |
Q |
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| T |
25071282 |
accaaaactaaaatattacaaatttgtttttcaataatttaattaggtggtttgattatttcttagtgatg |
25071212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 58 - 228
Target Start/End: Complemental strand, 25084288 - 25084119
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcatttatttgc |
157 |
Q |
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| T |
25084288 |
gtgagatgaaaataaaggccattgatttgtggtctgcaattcagaaaatagatgattggagagatgtttgtttcgtgtaagtacgatctcatttgtatgc |
25084189 |
T |
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| Q |
158 |
acctaaactataatgtttcaaatttgtttctccgtaatttaattaggtggtttgattatttcttagtgatg |
228 |
Q |
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| T |
25084188 |
acct-aactaaaatatttcaaatttgtttatcaataatttaattaggggatttgattatttcttagtgatg |
25084119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 58 - 147
Target Start/End: Complemental strand, 25090580 - 25090491
Alignment:
| Q |
58 |
gtgagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctc |
147 |
Q |
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| T |
25090580 |
gtgagatgaaaataaaggtcattgatatgtggtctgcaatttagaaaagagatgattggaaagatgtttgtttcatgtaagtatgatctc |
25090491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 25058464 - 25058378
Alignment:
| Q |
63 |
atgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
149 |
Q |
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|||||||| |||| ||||||| |||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| || |||||| |
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| T |
25058464 |
atgaacatcaaggccattgatttgtggtctttaattcagagaagagatgattggaaagaagtttgtttcatgtaagtgtgctctcat |
25058378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 228
Target Start/End: Complemental strand, 25089973 - 25089897
Alignment:
| Q |
155 |
tgcacctaaactataatgtttcaaatttgtttctccgtaat---ttaattaggtggtttgattatttcttagtgatg |
228 |
Q |
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| T |
25089973 |
tgcacctaatctaaaatgttttaaatttgtttatcaataataatttagtttggtggtttgattatttcttagtgatg |
25089897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 149
Target Start/End: Complemental strand, 25094759 - 25094670
Alignment:
| Q |
60 |
gagatgaacataaaggtcattgatatgtggtctgcaattcagaaaagagatgattggagagatgtttgtttcatgtaagtatggtctcat |
149 |
Q |
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| T |
25094759 |
gagatgaatatcaaggccattgatctgtggtctgcaatccaaaaaagggataactggcgaaatgtttgcttcacgtaagtttgctctcat |
25094670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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